Evidence map›Paper›PMID 32040779›Full record

ArticleMarine biotechnology (New York, N.Y.)2020

Liver Transcriptome Profiling Reveals That Dietary DHA and EPA Levels Influence Suites of Genes Involved in Metabolism, Redox Homeostasis, and Immune Function in Atlantic Salmon (Salmo salar).

Xi Xue, Jennifer R Hall, Albert Caballero-Solares, Khalil Eslamloo, Richard G Taylor, Christopher C Parrish, Matthew L Rise

Abstract read
PubMed Publisher
In one paragraph

Article in Marine biotechnology (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Nutritional immunomodulation of Atlantic salmon response toFrontiers in molecular biosciences · 2022
    Article
  5. Article
  6. Transcriptome Profiling of Atlantic Salmon (Frontiers in immunology · 2021
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Xi XueDepartment of Ocean Sciences, Memorial University of Newfoundland, St. John's, NL, A1C 5S7, Canada.ORCID https://orcid.org/0000-0001-5621-1681
Jennifer R HallAquatic Research Cluster, CREAIT Network, Ocean Sciences Centre, Memorial University of Newfoundland, St. John's, NL, A1C 5S7, Canada.
Albert Caballero-SolaresDepartment of Ocean Sciences, Memorial University of Newfoundland, St. John's, NL, A1C 5S7, Canada. acaballeroso@mun.ca.ORCID https://orcid.org/0000-0001-7693-0739
Khalil EslamlooDepartment of Ocean Sciences, Memorial University of Newfoundland, St. John's, NL, A1C 5S7, Canada.
Richard G TaylorCargill Animal Nutrition, 10383 165th Avenue NW, Elk River, MN, 55330, USA.
Christopher C ParrishDepartment of Ocean Sciences, Memorial University of Newfoundland, St. John's, NL, A1C 5S7, Canada.
Matthew L RiseDepartment of Ocean Sciences, Memorial University of Newfoundland, St. John's, NL, A1C 5S7, Canada.ORCID https://orcid.org/0000-0002-5362-1703
Memorial University of Newfoundland · CACargill (United States) · US

Funding

Genome Atlantic GAPP #6604Genome Canada GAPP #6604Natural Sciences and Engineering Research Council of Canada 341304-2012Natural Sciences and Engineering Research Council of Canada Postgraduate Scholarship-Doctoral (PGS D)
6 · The paper itself

Abstract

The optimal dietary requirement of omega-3 long-chain polyunsaturated fatty acids (ω3 LC-PUFA), namely docosahexaenoic acid (DHA) and eicosapentaenoic acid (EPA), for Atlantic salmon that promotes growth and health warrants careful investigation. We used 44K microarrays to study the influence of increasing levels of dietary DHA + EPA (0, 1.0, and 1.4% of the diet, as formulated) in the presence of high linoleic acid (LA) on Atlantic salmon growth and liver transcriptome. After a 14-week feeding trial, Atlantic salmon fed diet ω3LC0 (i.e. 0% of DHA + EPA) showed significantly lower final weight and weight gain, and higher feed conversion ratio compared with ω3LC1.0 and ω3LC1.4 diet groups. The microarray experiment identified 55 and 77 differentially expressed probes (Rank Products analyses; PFP < 10%) in salmon fed diets ω3LC1.4 and ω3LC1.0 compared with those fed diet ω3LC0, respectively. The comparison between ω3LC1.4 and ω3LC1.0 revealed 134 differentially expressed probes. The microarray results were confirmed by qPCR analyses of 22 microarray-identified transcripts. Several key genes involved in fatty acid metabolism including LC-PUFA synthesis were upregulated in fish fed ω3LC0 compared with both other groups. Hierarchical clustering and linear regression analyses of liver qPCR and fatty acid composition data demonstrated significant correlations. In the current study, 1.0% ω3 LC-PUFA seemed to be the minimum requirement for Atlantic salmon based on growth performance; however, multivariate statistical analyses (PERMANOVA and SIMPER) showed that fish fed ω3LC1.0 and ω3LC1.4 diets had similar hepatic fatty acid profiles but marked differences in the transcript expression of biomarker genes involved in redox homeostasis (mgst1), immune responses (mxb, igmb, irf3, lect2a, srk2, and lyz2), and LC-PUFA synthesis (srebp1, fadsd5, and elovl2). This research has provided new insights into dietary requirement of DHA and EPA and their impact on physiologically important pathways in addition to lipid metabolism in Atlantic salmon.

Indexed as

Docosahexaenoic AcidsEicosapentaenoic AcidAnimal FeedAnimal Nutritional Physiological PhenomenaAnimalsAquacultureDietFatty AcidsGene Expression ProfilingHomeostasisLipid MetabolismLiverOxidation-ReductionSalmo salarDocosahexaenoic AcidsEicosapentaenoic Acideicosapentaenoic acid ethyl esterFatty AcidsDHAEPAHepatic transcriptomeImmuneMetabolismMolecular biomarkers

Identifiers

PMID32040779
OpenAlexW3006381845

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.