ArticlePlant molecular biology2020
Transcriptome analysis of sugar beet (Beta vulgaris L.) in response to alkaline stress.
Article in Plant molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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17 citing papers in PubMed, 40 citations in OpenAlex.
- Advances in Beet (Plants (Basel, Switzerland) · 2025Review
- Tissue-Specific RNA-Seq Analysis of Cotton Roots' Response to Compound Saline-Alkali Stress and the Functional Validation of the Key GenePlants (Basel, Switzerland) · 2025Article
- Salt Tolerance in Sugar Beet: From Impact Analysis to Adaptive Mechanisms and Future Research.Plants (Basel, Switzerland) · 2024Review
- Genome-wide association study identifies the genetic basis of key agronomic traits in 207 sugar beet accessions.Horticulture research · 2024Article
- Expression and Functional Identification ofInternational journal of molecular sciences · 2024Article
- Comparative analysis of infected cassava root transcriptomics reveals candidate genes for root rot disease resistance.Scientific reports · 2024Article
- Importance of pre-mRNA splicing and its study tools in plants.Advanced biotechnology · 2024Review
- Time-Course Transcriptome Analysis ofInternational journal of molecular sciences · 2023Article
- Transcriptome profiling reveals multiple regulatory pathways of Tamarix chinensis in response to salt stress.Plant cell reports · 2023Article
- Physiological and transcriptomic analysis of salt tolerantFrontiers in plant science · 2023Article
- Advancements and prospects of CRISPR/Cas9 technologies for abiotic and biotic stresses in sugar beet.Frontiers in genetics · 2023Review
- Identification of Potential Pathways ofPlants (Basel, Switzerland) · 2022Article
- Linking genome wide RNA sequencing with physio-biochemical and cytological responses to catalogue key genes and metabolic pathways for alkalinity stress tolerance in lentil (Lens culinaris Medikus).BMC plant biology · 2022Article
- Transcriptome Analysis of Leaf Senescence Regulation Under Alkaline Stress inFrontiers in plant science · 2022Article
- Genomic and transcriptomic-based analysis of agronomic traits in sugar beet (Frontiers in plant science · 2022Article
- An Insight into the Abiotic Stress Responses of Cultivated Beets (Plants (Basel, Switzerland) · 2021Review
- Temporal salt stress-induced transcriptome alterations and regulatory mechanisms revealed by PacBio long-reads RNA sequencing in Gossypium hirsutum.BMC genomics · 2020Article
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Authors and funding
9 authors at 2 institutions in 1 country.
Funding
Abstract
key messageRNA-seq was used to analyze the transcriptional changes in sugar beet (Beta vulgaris L.) triggered by alkaline solution to elucidate the molecular mechanism underlying alkaline tolerance in sugar beet. Several differentially expressed genes related to stress tolerance were identified. Our results provide a valuable resource for the breeding of new germplasms with high alkaline tolerance. Alkalinity is a highly stressful environmental factor that limits plant growth and production. Sugar beet own the ability to acclimate to various abiotic stresses, especially salt and alkaline stress. Although substantial previous studies on response of sugar beet to saline stress has been conducted, the expressions of alkali-responsive genes in sugar beet have not been comprehensively investigated. In this study, we conducted transcriptome analysis of leaves in sugar beet seedlings treated with alkaline solutions for 0 day (control, C), 3 days (short-term alkaline treatment, ST) and 7 days (long-term alkaline treatment, LT). The clean reads were obtained and assembled into 25,507 unigenes. Among them, 975 and 383 differentially expressed genes (DEGs) were identified in the comparison groups ST_vs_C and LT_vs_C, respectively. Gene ontology (GO) analysis revealed that oxidation-reduction process and lipid metabolic process were the most enriched GO term among the DEGs in ST_vs_C and LT_vs_C, respectively. According to Kyoto Encyclopedia of Genes and Genomes pathway, carbon fixation in photosynthetic organisms pathway were significantly enriched under alkaline stress. Besides, expression level of genes encoding D-3-phosphoglycerate dehydrogenase 1, glutamyl-tRNA reductase 1, fatty acid hydroperoxide lyase, ethylene-insensitive protein 2, metal tolerance protein 11 and magnesium-chelatase subunit ChlI, etc., were significantly altered under alkaline stress. Additionally, among the DEGs, 136 were non-annotated genes and 24 occurred with differential alternative splicing. Our results provide a valuable resource on alkali-responsive genes and should benefit the improvement of alkaline stress tolerance in sugar beet.
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