Evidence map›Paper›PMID 32040538›Full record

ArticlePloS one2020

Genetic variation in POT1 and risk of thyroid subsequent malignant neoplasm: A report from the Childhood Cancer Survivor Study.

Melissa A Richard, Philip J Lupo, Lindsay M Morton, Yutaka A Yasui, Yadav A Sapkota, Michael A Arnold, Geraldine Aubert, Joseph P Neglia, Lucie M Turcotte, Wendy M Leisenring and 7 more

Open access · goldAbstract readMulticenter Study
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. GermlineGenes · 2024
    Review
  5. Review
  6. Article
  7. Article
  8. Genetic susceptibility to hereditary non-medullary thyroid cancer.Hereditary cancer in clinical practice · 2022
    Review
  9. Review
  10. Short NK- and Naïve T-Cell Telomere Length Is Associated with Thyroid Cancer in Childhood Cancer Survivors: A Report from the Childhood Cancer Survivor Study.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2022
    Article
  11. Review
  12. Telomeres and Cancer.Life (Basel, Switzerland) · 2021
    Review
  13. Review
  14. Review
  15. Review
  16. Review
  17. Article
  18. Review
  19. Frailty and aging in cancer survivors.Translational research : the journal of laboratory and clinical medicine · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 2 countries.

Melissa A RichardDepartment of Pediatrics, Baylor College of Medicine and Dan L. Duncan Cancer Center, Houston, TX, United States of America.
Philip J LupoDepartment of Pediatrics, Baylor College of Medicine and Dan L. Duncan Cancer Center, Houston, TX, United States of America.ORCID 0000-0003-0978-5863
Lindsay M MortonDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, United States of America.
Yutaka A YasuiDepartment of Epidemiology and Cancer Control, St. Jude Children's Research Hospital, Memphis, TN, United States of America.
Yadav A SapkotaDepartment of Epidemiology and Cancer Control, St. Jude Children's Research Hospital, Memphis, TN, United States of America.
Michael A ArnoldDepartment of Pathology and Laboratory Medicine, Nationwide Children's Hospital, Columbus, Ohio, United States of America.
Geraldine AubertTerry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC, Canada.
Joseph P NegliaDepartment of Pediatrics, University of Minnesota, Minneapolis, MN, United States of America.
Lucie M TurcotteDepartment of Pediatrics, University of Minnesota, Minneapolis, MN, United States of America.
Wendy M LeisenringDivision of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA, United States of America.
Joshua N SampsonDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, United States of America.
Stephen J ChanockDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, United States of America.
Melissa M HudsonDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, United States of America.
Gregory T ArmstrongDepartment of Epidemiology and Cancer Control, St. Jude Children's Research Hospital, Memphis, TN, United States of America.
Leslie L RobisonDepartment of Epidemiology and Cancer Control, St. Jude Children's Research Hospital, Memphis, TN, United States of America.
Smita BhatiaInstitute for Cancer Outcomes and Survivorship, University of Alabama at Birmingham, Birmingham, AL, England.
Maria Monica GramatgesDepartment of Pediatrics, Baylor College of Medicine and Dan L. Duncan Cancer Center, Houston, TX, United States of America.ORCID 0000-0002-0947-104X
St. Jude Children's Research Hospital · USBaylor College of Medicine · USNational Cancer Institute · USUniversity of Minnesota · USBC Cancer Agency · CAFred Hutch Cancer Center · USLeidos (United States) · USNationwide Children's Hospital · USUniversity of Alabama at Birmingham · US

Funding

Mach-LETSGO: Machine-LEarning of Treatment, Survey, and Genetics towards Obtaining Correct Classification of Chronic Conditions in Adult Survivors in the Childhood Cancer Survivor Study - CCSS SupplU24CA055727 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Gregory Armstrong · 1999 to 2026
$96.7M
(PQB-1) Telomere maintenance defects and thyroid second cancer in childhood cancer survivorsR01CA194473 · NCI · BAYLOR COLLEGE OF MEDICINE · PI GRAMATGES, MARIA MONICA · 2015 to 2019
$1.6M
Treatment Modifications, Outcomes and Provider Decision Making in the Management of Subsequent Breast Cancers Among Survivors of Childhood CancerK08CA234232 · NCI · UNIVERSITY OF MINNESOTA · PI TURCOTTE, LUCIE MARIE · 2018 to 2021
$714k
NCI NIH HHS K08 CA234232NCI NIH HHS R01 CA194473NCI NIH HHS U24 CA055727
6 · The paper itself

Abstract

backgroundTelomere length is associated with risk for thyroid subsequent malignant neoplasm in survivors of childhood cancer. Here, we investigated associations between thyroid subsequent malignant neoplasm and inherited variation in telomere maintenance genes.

methodsWe used RegulomeDB to annotate the functional impact of variants mapping to 14 telomere maintenance genes among 5,066 five-or-more year survivors who participate in the Childhood Cancer Survivor Study (CCSS) and who are longitudinally followed for incidence of subsequent cancers. Hazard ratios for thyroid subsequent malignant neoplasm were calculated for 60 putatively functional variants with minor allele frequency ≥1% in or near telomere maintenance genes. Functional impact was further assessed by measuring telomere length in leukocyte subsets.

resultsThe minor allele at Protection of Telomeres-1 (POT1) rs58722976 was associated with increased risk for thyroid subsequent malignant neoplasm (adjusted HR = 6.1, 95% CI: 2.4, 15.5, P = 0.0001; Fisher's exact P = 0.001). This imputed SNP was present in three out of 110 survivors who developed thyroid cancer vs. 14 out of 4,956 survivors who did not develop thyroid cancer. In a subset of 83 survivors with leukocyte telomere length data available, this variant was associated with longer telomeres in B lymphocytes (P = 0.004).

conclusionsUsing a functional variant approach, we identified and confirmed an association between a low frequency intronic regulatory POT1 variant and thyroid subsequent malignant neoplasm in survivors of childhood cancer. These results suggest that intronic variation in POT1 may affect key protein binding interactions that impact telomere maintenance and genomic integrity.

Indexed as

AdolescentCancer SurvivorsChildChild, PreschoolCohort StudiesFemaleGene FrequencyGenetic Predisposition to DiseaseGenetic VariationHumansIncidenceIntronsLongitudinal StudiesMaleNeoplasms, Second PrimaryPolymorphism, Single NucleotidePOT1 protein, humanShelterin ComplexTelomere-Binding Proteins

Identifiers

PMID32040538
PMCPMC7010302
OpenAlexW3004902922

What OpenQuestion holds

Textmetadata
LicenceCC0
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.