Evidence map›Paper›PMID 32039147›Full record

ArticleFrontiers in chemistry2019

Diubiquitin-Based NMR Analysis: Interactions Between Lys6-Linked diUb and UBA Domain of UBXN1.

Dharjath Shahul Hameed, Gabrielle B A van Tilburg, Remco Merkx, Dennis Flierman, Hans Wienk, Farid El Oualid, Kay Hofmann, Rolf Boelens, Huib Ovaa

Open access · goldAbstract read
In one paragraph

Article in Frontiers in chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. A Chemical Biology Primer for NMR Spectroscopists.Journal of magnetic resonance open · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Dharjath Shahul HameedDepartment of Cell Biology II, The Netherlands Cancer Institute, Amsterdam, Netherlands.
Gabrielle B A van TilburgDepartment of Cell Biology II, The Netherlands Cancer Institute, Amsterdam, Netherlands.
Remco MerkxDepartment of Cell Biology II, The Netherlands Cancer Institute, Amsterdam, Netherlands.
Dennis FliermanDepartment of Cell Biology II, The Netherlands Cancer Institute, Amsterdam, Netherlands.
Hans WienkNMR Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht University, Utrecht, Netherlands.
Farid El OualidDepartment of Cell Biology II, The Netherlands Cancer Institute, Amsterdam, Netherlands.
Kay HofmannInstitute for Genetics, University of Cologne, Cologne, Germany.
Rolf BoelensNMR Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht University, Utrecht, Netherlands.
Huib OvaaDepartment of Cell Biology II, The Netherlands Cancer Institute, Amsterdam, Netherlands.
Leiden University · NLOncode Institute · NLThe Netherlands Cancer Institute · NLUtrecht University · NLUniversity of Cologne · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ubiquitination is a process in which a protein is modified by the covalent attachment of the C-terminal carboxylic acid of ubiquitin (Ub) to the ε-amine of lysine or N-terminal methionine residue of a substrate protein or another Ub molecule. Each of the seven internal lysine residues and the N-terminal methionine residue of Ub can be linked to the C-terminus of another Ub moiety to form 8 distinct Ub linkages and the resulting differences in linkage types elicit different Ub signaling pathways. Cellular responses are triggered when proteins containing ubiquitin-binding domains (UBDs) recognize and bind to specific polyUb linkage types. To get more insight into the differences between polyUb chains, all of the seven lysine-linked di-ubiquitin molecules (diUbs) were prepared and used as a model to study their structural conformations in solution using NMR spectroscopy. We report the synthesis of diUb molecules, fully

Indexed as

extended UBA domainisotope labeled diubiquitinNMRsolid phase peptide synthesisUBXN1

Identifiers

PMID32039147
PMCPMC6987245
OpenAlexW3001079346

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.