Evidence map›Paper›PMID 32038704›Full record

ArticleFrontiers in genetics2019

Combining Citizen Science and Genomics to Investigate Tick, Pathogen, and Commensal Microbiome at Single-Tick Resolution.

Gaurav Chauhan, Jesse McClure, Jessica Hekman, Patrick W Marsh, Jeffrey A Bailey, Rachel F Daniels, Diane P Genereux, Elinor K Karlsson

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. The contribution ofParasitology · 2023
    Review
  7. Article
  8. Passive Surveillance of Human-BitingInternational journal of environmental research and public health · 2023
    Article
  9. Article
  10. EchidnaCSI: Engaging the public in research and conservation of the short-beaked echidna.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Darwinian genomics and diversity in the tree of life.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Review
  13. Article
  14. What do we know about the microbiome ofFrontiers in cellular and infection microbiology · 2022
    Review
  15. Article
  16. Digital Citizen Science for Responding to COVID-19 Crisis: Experiences from Iran.International journal of environmental research and public health · 2021
    Article
  17. Article
  18. Grappling with the tick microbiome.Trends in parasitology · 2021
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Gaurav ChauhanBioinformatics and Integrative Biology Program, University of Massachusetts Medical School, Worcester, MA, United States.
Jesse McClureBioinformatics and Integrative Biology Program, University of Massachusetts Medical School, Worcester, MA, United States.
Jessica HekmanVertebrate Genomics, Broad Institute of MIT and Harvard, Cambridge, MA, United States.
Patrick W MarshDepartment of Pathology and Laboratory Medicine, Warren Alpert Medical School, Brown University, Providence, RI, United States.
Jeffrey A BaileyDepartment of Pathology and Laboratory Medicine, Warren Alpert Medical School, Brown University, Providence, RI, United States.
Rachel F DanielsVertebrate Genomics, Broad Institute of MIT and Harvard, Cambridge, MA, United States.
Diane P GenereuxVertebrate Genomics, Broad Institute of MIT and Harvard, Cambridge, MA, United States.
Elinor K KarlssonBioinformatics and Integrative Biology Program, University of Massachusetts Medical School, Worcester, MA, United States.
University of Massachusetts Chan Medical School · USBroad Institute · USBrown University · USHarvard University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The prevalence of tickborne diseases worldwide is increasing virtually unchecked due to the lack of effective control strategies. The transmission dynamics of tickborne pathogens are influenced by the tick microbiome, tick co-infection with other pathogens, and environmental features. Understanding this complex system could lead to new strategies for pathogen control, but will require large-scale, high-resolution data. Here, we introduce Project Acari, a citizen science-based project to assay, at single-tick resolution, species, pathogen infection status, microbiome profile, and environmental conditions of tens of thousands of ticks collected from numerous sites across the United States. In the first phase of the project, we collected more than 2,400 ticks wild-caught by citizen scientists and developed high-throughput methods to process and sequence them individually. Applying these methods to 192

Indexed as

citizen sciencedisease transmissiongenomicshost-pathogenlyme diseasemicrobiometickborne diseasetick vector

Identifiers

PMID32038704
PMCPMC6985576
OpenAlexW3002412643

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.