Evidence map›Paper›PMID 32038702›Full record

ArticleFrontiers in genetics2019

Enhancing Hybrid Prediction in Pearl Millet Using Genomic and/or Multi-Environment Phenotypic Information of Inbreds.

Diego Jarquin, Reka Howard, Zhikai Liang, Shashi K Gupta, James C Schnable, Jose Crossa

Abstract read
In one paragraph

Article in Frontiers in genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. The potentialities of omics resources for millet improvement.Functional & integrative genomics · 2023
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Multi-omics-based prediction of hybrid performance in canola.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Article
  11. Article
  12. Review
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Diego JarquinDepartment of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, United States.
Reka HowardDepartment of Statistics, University of Nebraska-Lincoln, Lincoln, NE, United States.
Zhikai LiangDepartment of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, United States.
Shashi K GuptaInternational Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
James C SchnableDepartment of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, United States.
Jose CrossaInternational Maize and Wheat Improvement Center (CIMMYT), Ciudad de Mexico, Mexico.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genomic selection (GS) is an emerging methodology that helps select superior lines among experimental cultivars in plant breeding programs. It offers the opportunity to increase the productivity of cultivars by delivering increased genetic gains and reducing the breeding cycles. This methodology requires inexpensive and sufficiently dense marker information to be successful, and with whole genome sequencing, it has become an important tool in many crops. The recent assembly of the pearl millet genome has made it possible to employ GS models to improve the selection procedure in pearl millet breeding programs. Here, three GS models were implemented and compared using grain yield and dense molecular marker information of pearl millet obtained from two different genotyping platforms (C [conventional GBS RAD-seq] and T [tunable GBS tGBS]). The models were evaluated using three different cross-validation (CV) schemes mimicking real situations that breeders face in breeding programs: CV2 resembles an incomplete field trial, CV1 predicts the performance of untested hybrids, and CV0 predicts the performance of hybrids in unobserved environments. We found that (

Indexed as

conventional and tunable GBSgeneral combining abilitygenomic selectiongenotype-by-environment interaction G×Ehybrid predictionspecific combining ability

Identifiers

PMID32038702
PMCPMC6993057

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.