Evidence map›Paper›PMID 32036464›Full record

ArticlePlanta2020

Anthocyanin regulatory and structural genes associated with violet flower color of Matthiola incana.

Latifa Nuraini, Yukiko Ando, Kentaro Kawai, Fumi Tatsuzawa, Kotomi Tanaka, Masaki Ochiai, Katsumi Suzuki, Verónica Aragonés, José-Antonio Daròs, Takashi Nakatsuka

Abstract read
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In one paragraph

Article in Planta, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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  7. Genome-Wide Identification and Characterization ofInternational journal of molecular sciences · 2023
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  13. Composition of Flavonoids in the Petals ofFrontiers in plant science · 2021
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Latifa NurainiThe United Graduate School of Agricultural Science, Gifu University, 1-1 Yanagido, Gifu-shi, Gifu, 501-1193, Japan.
Yukiko AndoGraduate School of Integrated Science and Technology, Shizuoka University, 836 Ohya, Suruga-ku, Shizuoka, 422-8529, Japan.
Kentaro KawaiGraduate School of Integrated Science and Technology, Shizuoka University, 836 Ohya, Suruga-ku, Shizuoka, 422-8529, Japan.
Fumi TatsuzawaFaculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, 020-8550, Japan.
Kotomi TanakaFaculty of Agriculture, Shizuoka University, 836 Ohya, Suruga-ku, Shizuoka, 422-8529, Japan.
Masaki OchiaiThe United Graduate School of Agricultural Science, Gifu University, 1-1 Yanagido, Gifu-shi, Gifu, 501-1193, Japan.
Katsumi SuzukiThe United Graduate School of Agricultural Science, Gifu University, 1-1 Yanagido, Gifu-shi, Gifu, 501-1193, Japan.
Verónica AragonésInstituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas-Universitat Politècnica de València), 46022, Valencia, Spain.
José-Antonio DaròsInstituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas-Universitat Politècnica de València), 46022, Valencia, Spain.
Takashi NakatsukaThe United Graduate School of Agricultural Science, Gifu University, 1-1 Yanagido, Gifu-shi, Gifu, 501-1193, Japan. nakatsuka.takashi@shizuoka.ac.jp.ORCID http://orcid.org/0000-0003-4614-0351
Shizuoka University · JPConsejo Superior de Investigaciones Científicas · ESGifu University · JPIwate University · JP

Funding

Japan Society for the Promotion of Science 17H03765Ministerio de Ciencia, Innovación y Universidades BIO2017-83184-R
6 · The paper itself

Abstract

MAIN

conclusionMiMYB1 and MibHLH2 play key roles in anthocyanin biosynthesis in Matthiola incana flowers. We established a transient expression system using Turnip mosaic virus vector in M. incana. Garden stock (Matthiola incana (L.) R. Br.) is a popular flowering plant observed from winter to spring in Japan. Here we observed that anthocyanin accumulation in 'Vintage Lavender' increased with flower development, whereas flavonol accumulation remained constant throughout flower development. We obtained five transcription factor genes, MiMYB1, MibHLH1, MibHLH2, MiWDR1, and MiWDR2, from M. incana floral cDNA contigs. Yeast two-hybrid analyses revealed that MiMYB1 interacted with MibHLH1, MibHLH2, and MiWDR1, but MiWDR2 did not interact with any transcription factor. Expression levels of MiMYB1 and MibHLH2 increased in petals during floral bud development. Their expression profiles correlated well with the temporal profiles of MiF3'H, MiDFR, MiANS, and Mi3GT transcripts and anthocyanin accumulation profile. On the other hand, MibHLH1 was expressed weakly in all organs of 'Vintage Lavender'. However, high expression levels of MibHLH1 were detected in petals of other cultivars with higher levels of anthocyanin accumulation than 'Vintage Lavender'. MiWDR1 and MiWDR2 maintained constant expression levels in petals during flower development and vegetative organs. Transient MiMYB1 expression in 1-month-old M. incana seedlings using a Turnip mosaic virus vector activated transcription of the endogenous anthocyanin biosynthetic genes MiF3'H, MiDFR, and MiANS and induced ectopic anthocyanin accumulation in leaves. Therefore, MiMYB1 possibly interacts with MibHLH2 and MiWDR1, and this trimeric protein complex activates the transcription of anthocyanin biosynthetic genes in M. incana flowers. Moreover, MibHLH1 acts as an enhancer of anthocyanin biosynthesis with the MiMYB1-MibHLH2-MiWDR1 complex. This study revealed the molecular mechanism involved in the regulation of anthocyanin accumulation levels in M. incana flowers.

Indexed as

Genes, PlantAnthocyaninsBiosynthetic PathwaysBrassicaceaeFlavonoidsFlowersGene Expression Regulation, PlantNicotianaPigmentationPotyvirusProtein BindingSeedlingsTime FactorsAnthocyaninsFlavonoidsBasic helix–loop–helixGarden stockR2R3MYBTurnip mosaic virusWD40 repeat

Identifiers

PMID32036464
OpenAlexW3004546963

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.