Evidence map›Paper›PMID 32036203›Full record

ArticleComputer methods and programs in biomedicine2020

Survival estimation through the cumulative hazard with monotone natural cubic splines using convex optimization-the HCNS approach.

Leonidas E Bantis, John V Tsimikas, Stelios D Georgiou

Abstract read
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Article in Computer methods and programs in biomedicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

3 authors.

Leonidas E BantisDept. of Biostatistics and Data Science, University of Kansas Medical Center, Kansas City, KS 66160, USA. Electronic address: lbantis@kumc.edu.
John V TsimikasDept. of Statistics and Actuarial-Financial Mathematics, University of the Aegean, Samos 83200, Greece.
Stelios D GeorgiouSchool of Science, RMIT University, VIC 3000, Australia.

Funding

RADx-UP: Improving the Response of Local Urban and Rural Communities to Disparities in Covid-19 TestingUL1TR002366 · NCATS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Mario Castro, JAMES STEVEN LEEDER · 2017 to 2026
$44.3M
Using Integrated Omics to Identify Dysfunctional Genetic Mechanisms Influencing Schizophrenia and Sleep DisturbancesP20GM130423 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI ANDREW K. GODWIN · 2019 to 2026
$21.5M
NCATS NIH HHS UL1 TR002366NIGMS NIH HHS P20 GM130423
6 · The paper itself

Abstract

BACKGROUND AND

objectivesIn survival analysis both the Kaplan-Meier estimate and the Cox model enjoy a broad acceptance. We present an improved spline-based survival estimate and offer a fully automated software for its implementation. We explore the use of natural cubic splines that are constrained to be monotone. Apart from its superiority over the Kaplan Meier estimator our approach overcomes limitations of other known smoothing approaches and can accommodate covariates. Unlike other spline methods, concerns of computational problems and issues of overfitting are resolved since no attempt is made to maximize a likelihood once the Kaplan-Meier estimator is obtained. An application to laryngeal cancer data, a simulation study and illustrations of the broad application of the method and its software are provided. In addition to presenting our approaches, this work contributes to bridging a communication gap between clinicians and statisticians that is often apparent in the medical literature.

methodsWe employ a two-stage approach: first obtain the stepwise cumulative hazard and then consider a natural cubic spline to smooth its steps under restrictions of monotonicity between any consecutive knots. The underlying region of monotonicity corresponds to a non-linear region that encompasses the full family of monotone third-degree polynomials. We approximate it linearly and reduce the problem to a restricted least squares one under linear restrictions. This ensures convexity. We evaluate our method through simulations against competitive traditional approaches.

resultsOur method is compared to the popular Kaplan Meier estimate both in terms of mean squared error and in terms of coverage. Over-fitting is avoided by construction, as our spline attempts to approximate the empirical estimate of the cumulative hazard itself, and is not fitted directly on the data.

conclusionsThe proposed approach will enable clinical researchers to obtain improved survival estimates and valid confidence intervals over the full spectrum of the range of the survival data. Our methods outperform conventional approaches and can be readily utilized in settings beyond survival analysis such as diagnostic testing.

Indexed as

Electronic Data ProcessingSoftwareSurvival AnalysisAlgorithmsComputer SimulationHumansKaplan-Meier EstimateLaryngeal NeoplasmsProportional Hazards ModelsConstrained splinesCox modelKaplan MeierMATLABRestricted least squaresSmooth distribution functionSurvival

Identifiers

PMID32036203
PMCPMC9730433

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.