Evidence map›Paper›PMID 32034627›Full record

ArticleMolecular biology reports2020

Comparative analysis of chromosome 2A molecular organization in diploid and hexaploid wheat.

Parampreet Kaur, Suruchi Jindal, Bharat Yadav, Inderjit Yadav, Ajay Mahato, Priti Sharma, Satinder Kaur, O P Gupta, Jan Vrána, Hana Šimková and 7 more

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Molecular biology reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Novel PHOTOPERIOD-1 gene variants associate with yield-related and root-angle traits in European bread wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 4 countries.

Parampreet Kaur *School of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, 141004, India. parampreet162906@pau.edu.
Suruchi Jindal *School of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, 141004, India.
Bharat YadavSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, 141004, India.
Inderjit YadavSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, 141004, India.
Ajay MahatoICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India.
Priti SharmaSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, 141004, India.
Satinder KaurSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, 141004, India.
O P GuptaCollege of Agriculture, Punjab Agricultural University, Ludhiana, 141004, India.
Jan VránaInstitute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, CZ-78371, Olomouc, Czech Republic.
Hana ŠimkováInstitute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, CZ-78371, Olomouc, Czech Republic.
Jaroslav DoleželInstitute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, CZ-78371, Olomouc, Czech Republic.
Bikram Singh GillKansas State University, Manhattan, KS, 66506, USA.
Klaus F X MeyerMIPS/IBIS, Helmholtz- Zentrum München, Ingolstädter Landstrasse 1, 85764, Neuherberg, Germany.
J P KhuranaUniversity of Delhi, South Campus, New Delhi, 110021, India.
N K SinghICAR-National Institute for Plant Biotechnology, New Delhi, 110012, India.
Parveen ChhunejaSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, 141004, India.
Kuldeep SinghSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, 141004, India.
Punjab Agricultural University · INCzech Academy of Sciences, Institute of Experimental Botany · CZNational Research Centre on Plant Biotechnology · INHelmholtz Zentrum München · DEKansas State University · USNational Bureau of Plant Genetic Resources · INUniversity of Delhi · IN

Funding

Department of Biotechnology, New Delhi BT/IWGSC/03/TF/2008European Regional Development Fund CZ.02.1.01/0.0/0.0/16_019/0000827
6 · The paper itself

Abstract

Diploid A genome wheat species harbor immense genetic variability which has been targeted and proven useful in wheat improvement. Development and deployment of sequence-based markers has opened avenues for comparative analysis, gene transfer and marker assisted selection (MAS) using high throughput cost effective genotyping techniques. Chromosome 2A of wheat is known to harbor several economically important genes. The present study aimed at identification of genic sequences corresponding to full length cDNAs and mining of SSRs and ISBPs from 2A draft sequence assembly of hexaploid wheat cv. Chinese Spring for marker development. In total, 1029 primer pairs including 478 gene derived, 501 SSRs and 50 ISBPs were amplified in diploid A genome species Triticum monococcum and T. boeoticum identifying 221 polymorphic loci. Out of these, 119 markers were mapped onto a pre-existing chromosome 2A genetic map consisting of 42 mapped markers. The enriched genetic map constituted 161 mapped markers with final map length of 549.6 cM. Further, 2A genetic map of T. monococcum was anchored to the physical map of 2A of cv. Chinese Spring which revealed several rearrangements between the two species. The present study generated a highly saturated genetic map of 2A and physical anchoring of genetically mapped markers revealed a complex genetic architecture of chromosome 2A that needs to be investigated further.

Indexed as

Quantitative Trait LociChromosome MappingChromosomes, PlantDiploidyHigh-Throughput Nucleotide SequencingMicrosatellite RepeatsPolymorphism, Single NucleotidePolyploidySequence Analysis, DNATriticumAnchoringChromosome 2ADiploid wheatGenetic mapLinkage mapPhysical map

Identifiers

PMID32034627
OpenAlexW3004640295

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.