ArticleFunctional & integrative genomics2020
Genome-wide analysis of the TCP transcription factor genes in five legume genomes and their response to salt and drought stresses.
Article in Functional & integrative genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
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Who cites it
34 citing papers in PubMed, 54 citations in OpenAlex.
- Functional Characterization of the Oat (International journal of molecular sciences · 2026Article
- Genome-Wide Dissection of the TCP Gene Family in Peach and Expression Analysis Under Drought Stress.International journal of molecular sciences · 2026Article
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- Genome-wide identification, classification, and expression pattern analysis of the TCP transcription factor family in carrot.Frontiers in plant science · 2026Article
- Article
- Genome-wide identification and stress-responsive expression profiling of the TCP gene family in Cenchrus fungigraminus under drought and cold stress.BMC genomics · 2025Article
- Genome-wide identification and expression analysis of TCP transcription factors in Chrysanthemum indicum reveals their critical role in the response to various abiotic stresses.BMC plant biology · 2025Article
- Evolution and comparison of the expression of TCP genes in the benincaseae and cucurbiteae tribes.Scientific reports · 2025Article
- Systematic Analysis of thePlants (Basel, Switzerland) · 2025Article
- Integrating genome and transcriptome-wide data to explore the expression dynamics ofFrontiers in plant science · 2025Article
- Genome-wide identification of oatFrontiers in genetics · 2025Article
- Unveiling kiwifruit TCP genes: evolution, functions, and expression insights.Plant signaling & behavior · 2024Article
- Comprehensive Analysis of theInternational journal of molecular sciences · 2024Article
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- Genome-wide analysis and expression profile of3 Biotech · 2024Article
- Genome-Wide Identification and Analysis ofPlants (Basel, Switzerland) · 2023Article
- Article
- Identification ofBiology · 2023Article
- Genome-wise association study identified genomic regions associated with drought tolerance in mungbean (Vigna radiata (L.) R. Wilczek).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Genome-Wide Analysis and Expression of theGenes · 2023Article
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Authors and funding
6 authors at 1 institution in 1 country.
Funding
Abstract
The teosinte branched1, cycloidea, and proliferating cell factor family (TCP) proteins, plant-specific transcription factors, are involved in the regulation of plant development; however, the TCP gene family of legumes has been based primarily on a single crop. Here, a total of 55, 22, 26, 21, and 25 genes containing the VQ motif were identified from the genomes of Glycine max, Cicer arietinum, Phaseolus vulgaris, Medicago truncatula, and Lotus japonicus, respectively. Based on the phylogenetic analysis, we divided these TCP genes into three distinct subfamilies: PCF, CYC/TB1, and CIN. The conserved domain analysis indicated that the TCP gene family members contain the bHLH and R domains. The TCP genes from the same evolutionary branches of legumes shared similar motifs and structures. The promoter analysis revealed that cis-elements were related to stress responses, phytohormone responses, and physical and reproductive growth regulation. In addition, the TCP genes presented different expression patterns in the five legumes. Most of them showed specific expression patterns during development. The results of qRT-PCR indicated that the TCP genes played regulatory roles in both salt and drought stresses. The present study provides novel and detailed information regarding the legume TCP gene family, which aids in functional characterisation of the TCP genes in other plants.
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