Evidence map›Paper›PMID 32033524›Full record

ArticleBMC genomics2020

Comparative transcriptome profiling provides insights into plant salt tolerance in seashore paspalum (Paspalum vaginatum).

Peipei Wu, Steven Cogill, Yijian Qiu, Zhigang Li, Man Zhou, Qian Hu, Zhihui Chang, Rooksana E Noorai, Xiaoxia Xia, Christopher Saski and 2 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
14.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 51 citations in OpenAlex.

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  19. Relationship between the Phenylpropanoid Pathway and Dwarfism ofInternational journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Peipei WuDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA.
Steven CogillDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA.
Yijian QiuDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA.
Zhigang LiDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA.
Man ZhouDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA.
Qian HuDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA.
Zhihui ChangDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA.
Rooksana E NooraiClemson University Genomics Institute, Clemson University, Clemson, SC, 29634, USA.
Xiaoxia XiaClemson University Genomics Institute, Clemson University, Clemson, SC, 29634, USA.
Christopher SaskiClemson University Genomics Institute, Clemson University, Clemson, SC, 29634, USA.
Paul RaymerDepartment of Crop & Soil Sciences, University of Georgia, Griffin, GA, 30223, USA.
Hong LuoDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA. hluo@clemson.edu.ORCID http://orcid.org/0000-0001-9223-1786
Clemson University · USStanford Medicine · USUniversity of Georgia · US

Funding

The role of acetate fermentation in Entamoeba histolytica growth and infectionP20GM109094 · NIGMS · CLEMSON UNIVERSITY · PI KOZUBOWSKI, LUKASZ · 2016 to 2020
$10.4M
National Institute of Food and Agriculture 2019-33522-30102NIGMS NIH HHS P20 GM109094United States Golf Association, Inc. 2016-25-575
6 · The paper itself

Abstract

backgroundSeashore paspalum (Paspalum vaginatum), a halophytic warm-seasoned perennial grass, is tolerant of many environmental stresses, especially salt stress. To investigate molecular mechanisms underlying salinity tolerance in seashore paspalum, physiological characteristics and global transcription profiles of highly (Supreme) and moderately (Parish) salinity-tolerant cultivars under normal and salt stressed conditions were analyzed.

resultsPhysiological characterization comparing highly (Supreme) and moderately (Parish) salinity-tolerant cultivars revealed that Supreme's higher salinity tolerance is associated with higher Na

conclusionPhysiological and transcriptome analyses of seashore paspalum reveal major molecular underpinnings contributing to plant response to salt stress in this halophytic warm-seasoned perennial grass. The data obtained provide valuable molecular resources for functional studies and developing strategies to engineer plant salinity tolerance.

Indexed as

CalciumGene Expression ProfilingGenes, PlantPaspalumProton PumpsSalt ToleranceSalt-Tolerant PlantsSodiumSodium-Hydrogen ExchangersTranscription FactorsCalciumProton PumpsSodiumSodium-Hydrogen ExchangersTranscription FactorsCa2+-signalingPaspalum vaginatumPotassium retentionRNA-seqSalt stressTranscriptome profilingVacuolar sequestration

Identifiers

PMID32033524
PMCPMC7006205
OpenAlexW3007971855

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.