Evidence map›Paper›PMID 32033383›Full record

ArticleViruses2020

Genetic and Biological Diversity of Porcine Sapeloviruses Prevailing in Zambia.

Hayato Harima, Masahiro Kajihara, Edgar Simulundu, Eugene Bwalya, Yongjin Qiu, Mao Isono, Kosuke Okuya, Gabriel Gonzalez, Junya Yamagishi, Bernard M Hang'ombe and 3 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

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  12. Porcine teschovirus, sapelovirus, and enterovirus in Swiss pigs: multiplex RT-PCR investigation of viral frequencies and disease association.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 3 countries.

Hayato HarimaHokudai Center for Zoonosis Control in Zambia, School of Veterinary Medicine, the University of Zambia, P.O. Box 32379, Lusaka 10101, Zambia.
Masahiro KajiharaHokudai Center for Zoonosis Control in Zambia, School of Veterinary Medicine, the University of Zambia, P.O. Box 32379, Lusaka 10101, Zambia.
Edgar SimulunduDepartment of Disease Control, School of Veterinary Medicine, the University of Zambia, P.O. Box 32379, Lusaka 10101, Zambia.ORCID 0000-0001-9423-0816
Eugene BwalyaDepartment of Clinical Studies, School of Veterinary Medicine, the University of Zambia, P.O. Box 32379, Lusaka 10101, Zambia.ORCID 0000-0002-2887-3116
Yongjin QiuHokudai Center for Zoonosis Control in Zambia, School of Veterinary Medicine, the University of Zambia, P.O. Box 32379, Lusaka 10101, Zambia.
Mao IsonoDivision of Global Epidemiology, Hokkaido University Research Center for Zoonosis Control, N20 W10, Kita-ku, Sapporo 001-0020, Japan.
Kosuke OkuyaDivision of Global Epidemiology, Hokkaido University Research Center for Zoonosis Control, N20 W10, Kita-ku, Sapporo 001-0020, Japan.
Gabriel GonzalezDivision of Bioinformatics, Hokkaido University Research Center for Zoonosis Control, N20 W10, Kita-ku, Sapporo 001-0020, Japan.ORCID 0000-0002-2180-2120
Junya YamagishiDivision of Collaboration and Education, Hokkaido University Research Center for Zoonosis Control, N20 W10, Kita-ku, Sapporo 001-0020, Japan.
Bernard M Hang'ombeDepartment of Para-Clinical Studies, School of Veterinary Medicine, the University of Zambia, P.O. Box 32379, Lusaka 10101, Zambia.
Hirofumi SawaDepartment of Disease Control, School of Veterinary Medicine, the University of Zambia, P.O. Box 32379, Lusaka 10101, Zambia.
Aaron S MweeneDepartment of Disease Control, School of Veterinary Medicine, the University of Zambia, P.O. Box 32379, Lusaka 10101, Zambia.
Ayato TakadaDepartment of Disease Control, School of Veterinary Medicine, the University of Zambia, P.O. Box 32379, Lusaka 10101, Zambia.ORCID 0000-0003-2464-6642
University of Zambia · ZMHokkaido University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Porcine sapelovirus (PSV) has been detected worldwide in pig populations. Although PSV causes various symptoms such as encephalomyelitis, diarrhea, and pneumonia in pigs, the economic impact of PSV infection remains to be determined. However, information on the distribution and genetic diversity of PSV is quite limited, particularly in Africa. In this study, we investigated the prevalence of PSV infection in Zambia and characterized the isolated PSVs genetically and biologically. We screened 147 fecal samples collected in 2018 and found that the prevalences of PSV infection in suckling pigs and fattening pigs were high (36.2% and 94.0%, respectively). Phylogenetic analyses revealed that the Zambian PSVs were divided into three different lineages (Lineages 1-3) in the clade consisting of Chinese strains. The Zambian PSVs belonging to Lineages 2 and 3 replicated more efficiently than those belonging to Lineage 1 in Vero E6 and BHK cells. Bioinformatic analyses revealed that genetic recombination events had occurred and the recombination breakpoints were located in the L and 2A genes. Our results indicated that at least two biologically distinct PSVs could be circulating in the Zambian pig population and that genetic recombination played a role in the evolution of PSVs.

Indexed as

BiodiversityGenetic VariationAnimalsCell LineChlorocebus aethiopsCricetinaeDiarrheaFarmsFecesGenome, ViralPhylogenyPicornaviridaePicornaviridae InfectionsPrevalenceSwineSwine Diseasescharacterizationcomplete genomeporcine sapelovirusprevalencerecombinationZambia

Identifiers

PMID32033383
PMCPMC7077239
OpenAlexW3004928623

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.