Evidence map›Paper›PMID 32031583›Full record

ArticleClinical chemistry2020

Molecular Diagnosis of a Novel Coronavirus (2019-nCoV) Causing an Outbreak of Pneumonia.

Daniel K W Chu, Yang Pan, Samuel M S Cheng, Kenrie P Y Hui, Pavithra Krishnan, Yingzhi Liu, Daisy Y M Ng, Carrie K C Wan, Peng Yang, Quanyi Wang and 2 more

Registry-linked trialOpen access · hybridAbstract read
In one paragraph

Article in Clinical chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04387890 (Serologic Surveillance for SARS-CoV-2), which is not on this map. Cited by 682 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
682citing papers in PubMed, 4 pooled it
33.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04387890 unknown statusnot on this map

Serologic Surveillance for SARS-CoV-2 (COVID-19) in a Prospective Cohort of Health Care

TypeobservationalSponsorHospital Italiano de Buenos AiresRan2020 to 2020Enrolled50ConditionsCOVID-19, SARS-CoV 2, Health PersonnelArmsSerologic SARS-CoV-2 screening
3 · Its place in the literature

Who cites it

682 citing papers in PubMed, 4 syntheses or guidelines pooled it, 1,400 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. A systematic review and meta-analysis of the accuracy of SARS-COV-2 IGM and IGG tests in individuals with COVID-19.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2022
    Pooled it
  4. Pooled it
  5. Trial
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Despite good intentions, the regulation on in vitro diagnostic medical devices (IVDR) in Europe could impact negatively on preparedness and response for the next pandemic.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2026
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Observational
  20. Article

622 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Daniel K W ChuSchool of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong.
Yang PanBeijing Center for Disease Prevention and Control, Beijing, China.
Samuel M S ChengSchool of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong.
Kenrie P Y HuiSchool of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong.
Pavithra KrishnanSchool of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong.
Yingzhi LiuSchool of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong.
Daisy Y M NgSchool of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong.
Carrie K C WanSchool of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong.
Peng YangBeijing Center for Disease Prevention and Control, Beijing, China.
Quanyi WangBeijing Center for Disease Prevention and Control, Beijing, China.
Malik PeirisSchool of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong.
Leo L M PoonSchool of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong.
University of Hong Kong · HKCapital Medical University · CNBeijing Center for Disease Prevention and Control · CN

Funding

NIAID NIH HHS HHSN272201400006C
6 · The paper itself

Abstract

backgroundA novel coronavirus of zoonotic origin (2019-nCoV) has recently been identified in patients with acute respiratory disease. This virus is genetically similar to SARS coronavirus and bat SARS-like coronaviruses. The outbreak was initially detected in Wuhan, a major city of China, but has subsequently been detected in other provinces of China. Travel-associated cases have also been reported in a few other countries. Outbreaks in health care workers indicate human-to-human transmission. Molecular tests for rapid detection of this virus are urgently needed for early identification of infected patients.

methodsWe developed two 1-step quantitative real-time reverse-transcription PCR assays to detect two different regions (ORF1b and N) of the viral genome. The primer and probe sets were designed to react with this novel coronavirus and its closely related viruses, such as SARS coronavirus. These assays were evaluated using a panel of positive and negative controls. In addition, respiratory specimens from two 2019-nCoV-infected patients were tested.

resultsUsing RNA extracted from cells infected by SARS coronavirus as a positive control, these assays were shown to have a dynamic range of at least seven orders of magnitude (2x10-4-2000 TCID50/reaction). Using DNA plasmids as positive standards, the detection limits of these assays were found to be below 10 copies per reaction. All negative control samples were negative in the assays. Samples from two 2019-nCoV-infected patients were positive in the tests.

conclusionsThe established assays can achieve a rapid detection of 2019n-CoV in human samples, thereby allowing early identification of patients.

Indexed as

Clinical Laboratory TechniquesBetacoronavirusCoronavirus InfectionsCOVID-19COVID-19 TestingDisease OutbreaksHumansPandemicsPhylogenyPneumonia, ViralReal-Time Polymerase Chain ReactionRNA, ViralSARS-CoV-2RNA, Viral

Identifiers

PMID32031583
PMCPMC7108203
OpenAlexW3003637715

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.