Evidence map›Paper›PMID 32031522›Full record

ArticleeLife2020

β11-12 linker isomerization governs acid-sensing ion channel desensitization and recovery.

Matthew L Rook, Abby Williamson, John D Lueck, Maria Musgaard, David M Maclean

Abstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Mechanism of acid-sensing ion channel modulation by Hi1a.The Journal of general physiology · 2024
    Article
  7. Review
  8. Article
  9. A conserved peptide-binding pocket in HyNaC/ASIC ion channels.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Proline substitutions in the ASIC1 β11-12 linker slow desensitization.bioRxiv : the preprint server for biology · 2024
    Article
  15. Article
  16. Photomodulation of the ASIC1a acidic pocket destabilizes the open state.Protein science : a publication of the Protein Society · 2023
    Article
  17. Review
  18. Article
  19. Genetically encoded crosslinkers to address protein-protein interactions.Protein science : a publication of the Protein Society · 2023
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Matthew L RookGraduate Program in Cellular and Molecular Pharmacology and Physiology, Rochester, United States.ORCID 0000-0002-5332-7678
Abby WilliamsonBiomedical Engineering Program, University of Rochester, New York, United States.
John D LueckDepartment of Pharmacology and Physiology, University of Rochester Medical Center, Rochester, United States.
Maria MusgaardDepartment of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa, Canada.ORCID 0000-0001-6096-9014
David M MacleanDepartment of Pharmacology and Physiology, University of Rochester Medical Center, Rochester, United States.ORCID 0000-0001-8294-6075

Funding

Training in Cellular, Biochemical and Molecular SciencesT32GM068411 · NIGMS · UNIVERSITY OF ROCHESTER · PI MAQUAT, LYNNE E · 2005 to 2019
$3.9M
3D structure and function of Acid Sensing Ion channelsR00NS094761 · NINDS · UNIVERSITY OF ROCHESTER · PI MACLEAN, DAVID MALCOM · 2017 to 2019
$747k
Canada Research Chairs 950-232154Cystic Fibrosis Foundation LUECK18G0Natural Sciences and Engineering Research Council of Canada RGPIN 2019-06864NIGMS NIH HHS T32 GM068411NINDS NIH HHS R00 NS094761
6 · The paper itself

Abstract

Acid-sensing ion channels (ASICs) are neuronal sodium-selective channels activated by reductions in extracellular pH. Structures of the three presumptive functional states, high-pH resting, low-pH desensitized, and toxin-stabilized open, have all been solved for chicken ASIC1. These structures, along with prior functional data, suggest that the isomerization or flipping of the β11-12 linker in the extracellular, ligand-binding domain is an integral component of the desensitization process. To test this, we combined fast perfusion electrophysiology, molecular dynamics simulations and state-dependent non-canonical amino acid cross-linking. We find that both desensitization and recovery can be accelerated by orders of magnitude by mutating resides in this linker or the surrounding region. Furthermore, desensitization can be suppressed by trapping the linker in the resting state, indicating that isomerization of the β11-12 linker is not merely a consequence of, but a necessity for the desensitization process in ASICs.

Indexed as

Acid Sensing Ion ChannelsAnimalsChickensFemaleHazardous SubstancesHydrogen-Ion ConcentrationIsomerismMolecular Dynamics SimulationPregnancyAcid Sensing Ion ChannelsHazardous Substancesacid-sensing ion channeldesensitizationgatingneurosciencenon-canonical amino acidnone

Identifiers

PMID32031522
PMCPMC7041949

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.