Evidence map›Paper›PMID 32029745›Full record

ArticleNature communications2020

Photoswitching mechanism of a fluorescent protein revealed by time-resolved crystallography and transient absorption spectroscopy.

Joyce Woodhouse, Gabriela Nass Kovacs, Nicolas Coquelle, Lucas M Uriarte, Virgile Adam, Thomas R M Barends, Martin Byrdin, Eugenio de la Mora, R Bruce Doak, Mikolaj Feliks and 24 more

Abstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. A Versatile Tool to Predict and Guide RESOLFT Images Based on Photoswitching, Labelling and Optical Properties.Chemphyschem : a European journal of chemical physics and physical chemistry · 2026
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Predicting Excited-State Absorption Spectra from Non-Aufbau Configurations.Journal of chemical theory and computation · 2025
    Article
  10. Article
  11. Article
  12. Review
  13. XFEL Beamline Optical Instrumentation for Ultrafast Science.The journal of physical chemistry. B · 2024
    Review
  14. A snapshot love story: what serial crystallography has done and will do for us.Acta crystallographica. Section D, Structural biology · 2024
    Review
  15. Article
  16. The time revolution in macromolecular crystallography.Structural dynamics (Melville, N.Y.) · 2024
    Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors.

Joyce WoodhouseUniv. Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, F-38000, Grenoble, France.
Gabriela Nass Kovacs *Max-Planck-Institut für medizinische Forschung, Jahnstrasse 29, 69120, Heidelberg, Germany.
Nicolas Coquelle *Univ. Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, F-38000, Grenoble, France.ORCID http://orcid.org/0000-0002-8501-4908
Lucas M Uriarte *Univ. Lille, CNRS, UMR 8516, LASIR, Laboratoire de Spectrochimie Infrarouge et Raman, F59 000, Lille, France.ORCID http://orcid.org/0000-0001-6693-4699
Virgile Adam *Univ. Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, F-38000, Grenoble, France.ORCID http://orcid.org/0000-0003-2209-7846
Thomas R M BarendsMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, 69120, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-9488-3005
Martin ByrdinUniv. Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, F-38000, Grenoble, France.ORCID http://orcid.org/0000-0002-6389-8714
Eugenio de la MoraUniv. Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, F-38000, Grenoble, France.ORCID http://orcid.org/0000-0001-6945-7357
R Bruce DoakMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, 69120, Heidelberg, Germany.
Mikolaj FeliksDepartment of Chemistry, University of Southern California, Los Angeles, USA.
Martin FieldUniv. Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, F-38000, Grenoble, France.ORCID http://orcid.org/0000-0001-8674-7997
Franck FieschiUniv. Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, F-38000, Grenoble, France.ORCID http://orcid.org/0000-0003-1194-8107
Virginia GuillonUniv. Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, F-38000, Grenoble, France.
Stefan JakobsDepartment of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.ORCID http://orcid.org/0000-0002-8028-3121
Yasumasa JotiJapan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5198, Japan.
Pauline MacheboeufUniv. Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, F-38000, Grenoble, France.ORCID http://orcid.org/0000-0003-4523-9923
Koji MotomuraInstitute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, 980-8577, Japan.
Karol NassMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, 69120, Heidelberg, Germany.ORCID http://orcid.org/0000-0001-8843-1566
Shigeki OwadaRIKEN SPring-8 Center, Sayo, Japan.
Christopher M RoomeMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, 69120, Heidelberg, Germany.
Cyril RuckebuschUniv. Lille, CNRS, UMR 8516, LASIR, Laboratoire de Spectrochimie Infrarouge et Raman, F59 000, Lille, France.ORCID http://orcid.org/0000-0001-8120-4133
Giorgio SchiròUniv. Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, F-38000, Grenoble, France.
Robert L ShoemanMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, 69120, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-1030-6738
Michel ThepautUniv. Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, F-38000, Grenoble, France.
Tadashi TogashiJapan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5198, Japan.
Kensuke TonoJapan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5198, Japan.
Makina YabashiRIKEN SPring-8 Center, Sayo, Japan.ORCID http://orcid.org/0000-0002-2472-1684
Marco CammarataDepartment of Physics, UMR UR1-CNRS 6251, University of Rennes 1, Rennes, France.ORCID http://orcid.org/0000-0003-3013-1186
Lutz FoucarMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, 69120, Heidelberg, Germany.
Dominique BourgeoisUniv. Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, F-38000, Grenoble, France.ORCID http://orcid.org/0000-0002-1862-7712
Michel SliwaUniv. Lille, CNRS, UMR 8516, LASIR, Laboratoire de Spectrochimie Infrarouge et Raman, F59 000, Lille, France. michel.sliwa@univ-lille.fr.ORCID http://orcid.org/0000-0002-5073-8180
Jacques-Philippe ColletierUniv. Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, F-38000, Grenoble, France.
Ilme SchlichtingMax-Planck-Institut für medizinische Forschung, Jahnstrasse 29, 69120, Heidelberg, Germany. ilme.schlichting@mpimf-heidelberg.mpg.de.ORCID http://orcid.org/0000-0002-0936-7496
Martin WeikUniv. Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, F-38000, Grenoble, France. weik@ibs.fr.ORCID http://orcid.org/0000-0001-9297-642X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reversibly switchable fluorescent proteins (RSFPs) serve as markers in advanced fluorescence imaging. Photoswitching from a non-fluorescent off-state to a fluorescent on-state involves trans-to-cis chromophore isomerization and proton transfer. Whereas excited-state events on the ps timescale have been structurally characterized, conformational changes on slower timescales remain elusive. Here we describe the off-to-on photoswitching mechanism in the RSFP rsEGFP2 by using a combination of time-resolved serial crystallography at an X-ray free-electron laser and ns-resolved pump-probe UV-visible spectroscopy. Ten ns after photoexcitation, the crystal structure features a chromophore that isomerized from trans to cis but the surrounding pocket features conformational differences compared to the final on-state. Spectroscopy identifies the chromophore in this ground-state photo-intermediate as being protonated. Deprotonation then occurs on the μs timescale and correlates with a conformational change of the conserved neighbouring histidine. Together with a previous excited-state study, our data allow establishing a detailed mechanism of off-to-on photoswitching in rsEGFP2.

Identifiers

PMID32029745
PMCPMC7005145

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