Evidence map›Paper›PMID 32028048›Full record

ArticleFungal genetics and biology : FG & B2020

Genomic characterization of Parengyodontium americanum sp. nov.

Marcus de M Teixeira, Anna Muszewska, Jason Travis, Leandro F Moreno, Sarah Ahmed, Chandler Roe, Heather Mead, Kamil Steczkiewicz, Darrin Lemmer, Sybren de Hoog and 3 more

Abstract read
In one paragraph

Article in Fungal genetics and biology : FG & B, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Name Changes for Fungi of Medical Importance, 2020 to 2021.Journal of clinical microbiology · 2023
    Review
  4. OMICS and Other Advanced Technologies in Mycological Applications.Journal of fungi (Basel, Switzerland) · 2023
    Review
  5. Genomic Characterization ofJournal of fungi (Basel, Switzerland) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Marcus de M TeixeiraDivision of Pathogen Genomics, Translational Genomics Research Institute-North, Flagstaff, AZ, USA; Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA; Faculty of Medicine, University of Brasília, Brasília-DF, Brazil.
Anna MuszewskaInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.
Jason TravisDivision of Pathogen Genomics, Translational Genomics Research Institute-North, Flagstaff, AZ, USA.
Leandro F MorenoWesterdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Sarah AhmedWesterdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Chandler RoeDivision of Pathogen Genomics, Translational Genomics Research Institute-North, Flagstaff, AZ, USA; Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.
Heather MeadPathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.
Kamil SteczkiewiczInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland; Centre of New Technologies, University of Warsaw, Warsaw, Poland. Electronic address: ksteczk@ibb.waw.pl.
Darrin LemmerDivision of Pathogen Genomics, Translational Genomics Research Institute-North, Flagstaff, AZ, USA.
Sybren de HoogWesterdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Paul KeimDivision of Pathogen Genomics, Translational Genomics Research Institute-North, Flagstaff, AZ, USA; Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.
Nathan WiederholdUniversity of Texas Health Science Center at San Antonio, San Antonio, TX, USA.
Bridget M BarkerDivision of Pathogen Genomics, Translational Genomics Research Institute-North, Flagstaff, AZ, USA; Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA. Electronic address: bridget.barker@nau.edu.

Funding

Defining the Mechanisms of Recombination in CoccidioidesR21AI128536 · NIAID · NORTHERN ARIZONA UNIVERSITY · PI BARKER, BRIDGET MARIE · 2018 to 2019
$408k
NIAID NIH HHS R21 AI128536
6 · The paper itself

Abstract

Modern genome analysis and phylogenomic methods have increased the number of fungal species, as well as enhanced appreciation of the degree of diversity within the fungal kingdom. In this context, we describe a new Parengyodontium species, P. americanum, which is phylogenetically related to the opportunistic human fungal pathogen P. album. Five unusual fungal isolates were recovered from five unique and confirmed coccidioidomycosis patients, and these isolates were subsequently submitted to detailed molecular and morphological identification procedures to determine identity. Molecular and morphological diagnostic analyses showed that the isolates belong to the Cordycipitaceae. Subsequently, three representative genomes were sequenced and annotated, and a new species, P. americanum, was identified. Using various genomic analyses, gene family expansions related to novel compounds and potential for ability to grow in diverse habitats are predicted. A general description of the genomic composition of this newly described species and comparison of genome content with Beauveria bassiana, Isaria fumosorosea and Cordyceps militaris shows a shared core genome of 6371 genes, and 148 genes that appear to be specific for P. americanum. This work provides the framework for future investigations of this interesting fungal species.

Indexed as

HypocrealesBeauveriaCoccidioidomycosisCordycepsFungal ProteinsGenome, FungalHumansOpportunistic InfectionsPhylogenyProteomicsFungal ProteinsComparative genomicsHypocrealesOpportunistic fungal pathogenParengyodontium americanum

Identifiers

PMID32028048
PMCPMC7194163

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.