Evidence map›Paper›PMID 32027711›Full record

ArticlePloS one2020

Duckweed hosts a taxonomically similar bacterial assemblage as the terrestrial leaf microbiome.

Kenneth Acosta, Jenny Xu, Sarah Gilbert, Elizabeth Denison, Thomas Brinkman, Sarah Lebeis, Eric Lam

Abstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

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  11. Learning beyond-pairwise interactions enables the bottom-up prediction of microbial community structure.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kenneth AcostaDepartment of Plant Biology, Rutgers the State University of New Jersey, New Brunswick, New Jersey, United States of America.ORCID 0000-0001-5309-2760
Jenny XuDepartment of Plant Biology, Rutgers the State University of New Jersey, New Brunswick, New Jersey, United States of America.
Sarah GilbertDepartment of Plant Biology, Rutgers the State University of New Jersey, New Brunswick, New Jersey, United States of America.
Elizabeth DenisonDepartment of Microbiology, University of Tennessee, Knoxville, Tennessee, United States of America.
Thomas BrinkmanDepartment of Plant Biology, Rutgers the State University of New Jersey, New Brunswick, New Jersey, United States of America.
Sarah LebeisDepartment of Microbiology, University of Tennessee, Knoxville, Tennessee, United States of America.
Eric LamDepartment of Plant Biology, Rutgers the State University of New Jersey, New Brunswick, New Jersey, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Culture-independent characterization of microbial communities associated with popular plant model systems have increased our understanding of the plant microbiome. However, the integration of other model systems, such as duckweed, could facilitate our understanding of plant microbiota assembly and evolution. Duckweeds are floating aquatic plants with many characteristics, including small size and reduced plant architecture, that suggest their use as a facile model system for plant microbiome studies. Here, we investigated the structure and assembly of the duckweed bacterial microbiome. First, a culture-independent survey of the duckweed bacterial microbiome from different locations in New Jersey revealed similar phylogenetic profiles. These studies showed that Proteobacteria is a dominant phylum in the duckweed bacterial microbiome. To observe the assembly dynamics of the duckweed bacterial community, we inoculated quasi-gnotobiotic duckweed with wastewater effluent from a municipal wastewater treatment plant. Our results revealed that duckweed strongly shapes its bacterial microbiome and forms distinct associations with bacterial community members from the initial inoculum. Additionally, these inoculation studies showed the bacterial communities of different duckweed species were similar in taxa composition and abundance. Analysis across the different duckweed bacterial communities collected in this study identified a set of "core" bacterial taxa consistently present on duckweed irrespective of the locale and context. Furthermore, comparison of the duckweed bacterial community to that of rice and Arabidopsis revealed a conserved taxonomic structure between the duckweed microbiome and the terrestrial leaf microbiome. Our results suggest that duckweeds utilize similar bacterial community assembly principles as those found in terrestrial plants and indicate a highly conserved structuring effect of leaf tissue on the plant microbiome.

Indexed as

MicrobiotaPhylogenyArabidopsisAraceaeBacteriaNew JerseyOryzaPlant LeavesProteobacteriaRNA, Ribosomal, 16SWastewaterRNA, Ribosomal, 16SWastewater

Identifiers

PMID32027711
PMCPMC7004381

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.