ArticleHorticulture research2020
CitGVD: a comprehensive database of citrus genomic variations.
Article in Horticulture research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
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Who cites it
15 citing papers in PubMed, 35 citations in OpenAlex.
- Qualitative Traits and Antioxidant Properties of Blood Oranges Are Affected by the Genotype and the Climatic Conditions.Foods (Basel, Switzerland) · 2024Article
- HortGenome Search Engine, a universal genomic search engine for horticultural crops.Horticulture research · 2024Article
- OrangeExpDB: an integrative gene expression database for Citrus spp.BMC genomics · 2024Article
- Genome-Wide Identification and Characterization of the Sweet Orange (International journal of molecular sciences · 2024Article
- MODMS: a multi-omics database for facilitating biological studies on alfalfa (Horticulture research · 2024Article
- Exploring Pan-Genomes: An Overview of Resources and Tools for Unraveling Structure, Function, and Evolution of Crop Genes and Genomes.Biomolecules · 2023Review
- Transcriptomic-based analysis to identify candidate genes for blue color rose breeding.Plant molecular biology · 2023Article
- ConservingPlants (Basel, Switzerland) · 2023Article
- Comparative study on secondary metabolites from different citrus varieties in the production area of Zhejiang.Frontiers in nutrition · 2023Article
- Genomic Approaches for Improvement of Tropical Fruits: Fruit Quality, Shelf Life and Nutrient Content.Genes · 2021Review
- CottonGVD: A Comprehensive Genomic Variation Database for Cultivated Cottons.Frontiers in plant science · 2021Article
- Transcriptome and Metabolome Comparison of Smooth and RoughFrontiers in plant science · 2021Article
- Systematic Analysis and Functional Validation of Citrus Pectin Acetylesterases (CsPAEs) Reveals that CsPAE2 Negatively Regulates Citrus Bacterial Canker Development.International journal of molecular sciences · 2020Article
- CsPrx25, a class III peroxidase in Citrus sinensis, confers resistance to citrus bacterial canker through the maintenance of ROS homeostasis and cell wall lignification.Horticulture research · 2020Article
- CsWAKL08, a pathogen-induced wall-associated receptor-like kinase in sweet orange, confers resistance to citrus bacterial canker via ROS control and JA signaling.Horticulture research · 2020Article
Corrections and comments
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Authors and funding
15 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Citrus is one of the most important commercial fruit crops worldwide. With the vast genomic data currently available for citrus fruit, genetic relationships, and molecular markers can be assessed for the development of molecular breeding and genomic selection strategies. In this study, to permit the ease of access to these data, a web-based database, the citrus genomic variation database (CitGVD, http://citgvd.cric.cn/home) was developed as the first citrus-specific comprehensive database dedicated to genome-wide variations including single nucleotide polymorphisms (SNPs) and insertions/deletions (INDELs). The current version (V1.0.0) of CitGVD is an open-access resource centered on 1,493,258,964 high-quality genomic variations and 84 phenotypes of 346 organisms curated from in-house projects and public resources. CitGVD integrates closely related information on genomic variation annotations, related gene annotations, and details regarding the organisms, incorporating a variety of built-in tools for data accession and analysis. As an example, CitGWAS can be used for genome-wide association studies (GWASs) with SNPs and phenotypic data, while CitEVOL can be used for genetic structure analysis. These features make CitGVD a comprehensive web portal and bioinformatics platform for citrus-related studies. It also provides a model for analyzing genome-wide variations for a wide range of crop varieties.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.