Evidence map›Paper›PMID 32024833›Full record

ArticleNature communications2020

Neo-functionalization of a Teosinte branched 1 homologue mediates adaptations of upland rice.

Jun Lyu, Liyu Huang, Shilai Zhang, Yesheng Zhang, Weiming He, Peng Zeng, Yan Zeng, Guangfu Huang, Jing Zhang, Min Ning and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
10.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Telomere-to-telomere pear (Horticulture research · 2023
    Article
  18. The genetic architecture of prolificacy in maize revealed by association mapping and bulk segregant analysis.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 3 countries.

Jun Lyu *State Key laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Research Center for Perennial Rice Engineering and Technology of Yunnan, School of Agriculture, Yunnan University, 650091, Kunming, Yunnan, China.
Liyu Huang *State Key laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Research Center for Perennial Rice Engineering and Technology of Yunnan, School of Agriculture, Yunnan University, 650091, Kunming, Yunnan, China.ORCID http://orcid.org/0000-0001-9666-6584
Shilai ZhangState Key laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Research Center for Perennial Rice Engineering and Technology of Yunnan, School of Agriculture, Yunnan University, 650091, Kunming, Yunnan, China.ORCID http://orcid.org/0000-0001-9791-2468
Yesheng ZhangState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, 650223, Kunming, Yunnan, China.ORCID http://orcid.org/0000-0001-6143-5161
Weiming HeState Key laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Research Center for Perennial Rice Engineering and Technology of Yunnan, School of Agriculture, Yunnan University, 650091, Kunming, Yunnan, China.
Peng ZengState Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macau, China.ORCID http://orcid.org/0000-0002-5460-2256
Yan ZengState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, 650223, Kunming, Yunnan, China.ORCID http://orcid.org/0000-0003-4091-3309
Guangfu HuangState Key laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Research Center for Perennial Rice Engineering and Technology of Yunnan, School of Agriculture, Yunnan University, 650091, Kunming, Yunnan, China.
Jing ZhangState Key laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Research Center for Perennial Rice Engineering and Technology of Yunnan, School of Agriculture, Yunnan University, 650091, Kunming, Yunnan, China.
Min NingState Key laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Research Center for Perennial Rice Engineering and Technology of Yunnan, School of Agriculture, Yunnan University, 650091, Kunming, Yunnan, China.ORCID http://orcid.org/0000-0003-1311-8772
Yachong BaoState Key laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Research Center for Perennial Rice Engineering and Technology of Yunnan, School of Agriculture, Yunnan University, 650091, Kunming, Yunnan, China.ORCID http://orcid.org/0000-0001-8001-4303
Shilei ZhaoBeijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0000-0001-7262-1322
Qi FuState Key laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Research Center for Perennial Rice Engineering and Technology of Yunnan, School of Agriculture, Yunnan University, 650091, Kunming, Yunnan, China.
Len J WadeThe University of Queensland, School of Agriculture and Food Sciences, Brisbane, QLD, 4072, Australia. len.wade@uq.edu.au.ORCID http://orcid.org/0000-0002-1321-4310
Hua ChenBeijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China. chenh@big.ac.cn.ORCID http://orcid.org/0000-0002-9829-6561
Wen WangState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, 650223, Kunming, Yunnan, China. wwang@mail.kiz.ac.cn.ORCID http://orcid.org/0000-0002-7801-2066
Fengyi HuState Key laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Research Center for Perennial Rice Engineering and Technology of Yunnan, School of Agriculture, Yunnan University, 650091, Kunming, Yunnan, China. hfengyi@ynu.edu.cn.ORCID http://orcid.org/0000-0003-4498-9490
Yunnan University · CNKunming Institute of Zoology · CNChinese Academy of Sciences · CNNorthwestern Polytechnical University · CNThe University of Queensland · AUUniversity of Macau · MO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rice orthologue of maize domestication gene Teosinte branched 1 (Tb1) affects tillering. But, unlike maize Tb1 gene, it was not selected during domestication. Here, we report that an OsTb1 duplicate gene (OsTb2) has been artificially selected during upland rice adaptation and that natural variation in OsTb2 is associated with tiller number. Interestingly, transgenic rice overexpressing this gene shows increased rather than decreased tillering, suggesting that OsTb2 gains a regulatory effect opposite to that of OsTb1 following duplication. Functional analyses suggest that the OsTb2 protein positively regulates tillering by interacting with the homologous OsTb1 protein and counteracts the inhibitory effect of OsTb1 on tillering. We further characterize two functional variations within OsTb2 that regulate protein function and gene expression, respectively. These results not only present an example of neo-functionalization that generates an opposite function following duplication but also suggest that the Tb1 homologue has been selected in upland rice.

Indexed as

Adaptation, BiologicalAgricultural IrrigationEvolution, MolecularGene DuplicationGene Expression Regulation, PlantMutationNicotianaOryzaPlant ProteinsPlants, Genetically ModifiedPolymorphism, Single NucleotidePlant Proteins

Identifiers

PMID32024833
PMCPMC7002408
OpenAlexW3005060420

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.