Evidence map›Paper›PMID 32024474›Full record

ArticleBMC infectious diseases2020

Application of whole-genome sequencing in a case study of renal tuberculosis in a child.

Darja Aleinikova, Ilva Pole, Janis Kimsis, Anita Skangale, Olga Bobrikova, Regina Kazelnika, Inta Jansone, Inga Norvaisa, Iveta Ozere, Renate Ranka

Open access · goldAbstract readCase Reports
In one paragraph

Article in BMC infectious diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
0.1field-weighted citation impact, top 55% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 4 citations in OpenAlex.

  1. Pathways of TB Transmission in Children-A Systematic Review of Molecular Epidemiological Studies.International journal of environmental research and public health · 2023
    Pooled it
  2. Article
  3. Endogenous reactivation cases identified by whole genome sequencing ofJournal of clinical tuberculosis and other mycobacterial diseases · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Darja AleinikovaLatvian Biomedical Research and Study Centre, Ratsupites Str 1, k-1, Riga, LV-1067, Latvia.
Ilva PoleLatvian Biomedical Research and Study Centre, Ratsupites Str 1, k-1, Riga, LV-1067, Latvia.
Janis KimsisLatvian Biomedical Research and Study Centre, Ratsupites Str 1, k-1, Riga, LV-1067, Latvia.
Anita SkangaleRiga East University Hospital, Centre of Tuberculosis and Lung Diseases, Upeslejas, Stopiņi region, LV-2118, Latvia.
Olga BobrikovaRiga East University Hospital, Centre of Tuberculosis and Lung Diseases, Upeslejas, Stopiņi region, LV-2118, Latvia.
Regina KazelnikaMadona Hospital, Rupniecibas Street 38, Madona, LV-4801, Latvia.
Inta JansoneLatvian Biomedical Research and Study Centre, Ratsupites Str 1, k-1, Riga, LV-1067, Latvia.
Inga NorvaisaRiga East University Hospital, Centre of Tuberculosis and Lung Diseases, Upeslejas, Stopiņi region, LV-2118, Latvia.
Iveta OzereRiga East University Hospital, Centre of Tuberculosis and Lung Diseases, Upeslejas, Stopiņi region, LV-2118, Latvia.
Renate RankaLatvian Biomedical Research and Study Centre, Ratsupites Str 1, k-1, Riga, LV-1067, Latvia. renate_r@biomed.lu.lv.
Riga East University Hospital · LVLatvian Biomedical Research and Study Centre · LVRiga Stradiņš University · LV

Funding

Latvian National Research Programme VPP "BIOMEDICINE"Riga Stradiņš University Nr. 23030102
6 · The paper itself

Abstract

backgroundUrogenital tuberculosis (TB) is rare in children and usually develops due to reactivation of the foci in the genitourinary tract after the latency period following initial infection. Urogenital TB in children has no pathognomonic clinical features that can result in overlooking or misdiagnosing this clinical entity. Here, we report important findings regarding the pathogenesis and transmission of TB by using genotyping and whole-genome sequencing (WGS) in a study of renal TB case in a child. CASE PRESENTATION: A 13-year-old boy was admitted to the hospital because of high fever, severe dry cough, flank pain and painful urination. Abdominal ultrasonography and CT revealed an 8 mm calculus in the kidney, and clinical findings were initially interpreted as nephrolithiasis. Nevertheless, due to the atypical clinical presentation of kidney stone disease, additional investigations for possible TB were performed. The QuantiFERON®-TB Gold Plus test was positive, and the Mantoux test resulted in 15 mm of induration, confirming infection with Mycobacterium tuberculosis (Mtb). Chest X-ray was normal. Chest CT revealed calcified intrathoracic lymph nodes. The urine sample tested positive for acid-fast bacilli, and Mtb cultures were obtained from urine and bronchial aspirate samples, resulting in a final diagnosis of intrathoracic lymph node and renal TB. Contact investigation revealed that the child's father was diagnosed with TB when the child was 1 year old. Genotyping and WGS analysis of Mtb isolates of the child and his father confirmed the epidemiological link and pointed to the latency of infection in the child.

conclusionsThis case report confirmed the development of active TB from calcified lesions in adolescent after 12 years of exposure, demonstrated the absence of microevolutionary changes in the Mtb genome during the period of latency, and proved the importance of appropriate evaluation and management to prevent the progression of TB infection to active TB disease. The use of WGS provided the ultimate resolution for the detection of TB transmission and reactivation events.

Indexed as

Whole Genome SequencingAdolescentAntibiotics, AntitubercularFathersGenotypeHumansInfectious Disease Transmission, VerticalLatent TuberculosisMaleMycobacterium tuberculosisNephrolithiasisTreatment OutcomeTuberculin TestTuberculosis, Lymph NodeTuberculosis, RenalAntibiotics, AntitubercularChildhood tuberculosisGenotypingUrogenital tuberculosisWhole-genome sequencing

Identifiers

PMID32024474
PMCPMC7003358
OpenAlexW3012828294

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.