Evidence map›Paper›PMID 32023475›Full record

ArticleCell reports2020

Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures.

Akshayalakshmi Sridhar, Akina Hoshino, Connor R Finkbeiner, Alex Chitsazan, Li Dai, Alexandra K Haugan, Kayla M Eschenbacher, Dana L Jackson, Cole Trapnell, Olivia Bermingham-McDonogh and 2 more

Abstract readComparative Study
In one paragraph

Article in Cell reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 181 papers.

0numbers the graph read from it
0cells of the map it votes in
181citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

181 citing papers in PubMed.

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121 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Akshayalakshmi SridharDepartment of Biological Structure, University of Washington, Seattle, WA 98195, USA.
Akina HoshinoDepartment of Biological Structure, University of Washington, Seattle, WA 98195, USA.
Connor R FinkbeinerDepartment of Biological Structure, University of Washington, Seattle, WA 98195, USA.
Alex ChitsazanDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Li DaiDepartment of Biological Structure, University of Washington, Seattle, WA 98195, USA.
Alexandra K HauganDepartment of Biological Structure, University of Washington, Seattle, WA 98195, USA.
Kayla M EschenbacherDepartment of Biological Structure, University of Washington, Seattle, WA 98195, USA.
Dana L JacksonDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Cole TrapnellDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Olivia Bermingham-McDonoghDepartment of Biological Structure, University of Washington, Seattle, WA 98195, USA.
Ian GlassDepartment of Pediatrics, University of Washington, Seattle, WA 98195, USA.
Thomas A RehDepartment of Biological Structure, University of Washington, Seattle, WA 98195, USA. Electronic address: tomreh@uw.edu.

Funding

Vision Research CoreP30EY001730 · NEI · UNIVERSITY OF WASHINGTON · PI JAMES Bryant HURLEY · 1985 to 2026
$23.5M
LABORATORY OF DEVELOPMENTAL BIOLOGYR24HD000836 · NICHD · UNIVERSITY OF WASHINGTON · PI Ian Amos Glass · 1995 to 2026
$16.9M
Pulmonary Macrophage Transplantation for Pulmonary Alveolar ProteinosisR01HL118342 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI TRAPNELL, BRUCE C, TRAPNELL, BRUCE COLSTON · 2014 to 2021
$4.5M
NEI NIH HHS P30 EY001730NHLBI NIH HHS R01 HL118342NICHD NIH HHS R24 HD000836
6 · The paper itself

Abstract

To study the development of the human retina, we use single-cell RNA sequencing (RNA-seq) at key fetal stages and follow the development of the major cell types as well as populations of transitional cells. We also analyze stem cell (hPSC)-derived retinal organoids; although organoids have a very similar cellular composition at equivalent ages as the fetal retina, there are some differences in gene expression of particular cell types. Moreover, the inner retinal lamination is disrupted at more advanced stages of organoids compared with fetal retina. To determine whether the disorganization in the inner retina is due to the culture conditions, we analyze retinal development in fetal retina maintained under similar conditions. These retinospheres develop for at least 6 months, displaying better inner retinal lamination than retinal organoids. Our single-cell RNA sequencing (scRNA-seq) comparisons of fetal retina, retinal organoids, and retinospheres provide a resource for developing better in vitro models for retinal disease.

Indexed as

Single-Cell AnalysisCells, CulturedFetusHumansMitosisOrganoidsPluripotent Stem CellsRetinaSpheroids, CellularTime FactorsTranscriptomelaminationneurogenesisorganoidsstem cells

Identifiers

PMID32023475
PMCPMC7901645

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.