Evidence map›Paper›PMID 32022247›Full record

ArticleBiometrics2020

Relapse or reinfection: Classification of malaria infection using transition likelihoods.

Feng-Chang Lin, Quefeng Li, Jessica T Lin

Open access · greenAbstract read
In one paragraph

Article in Biometrics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Epidemiology of malaria in saravan city and its suburbs from 2018 to 2023, Southeast Iran.Journal of research in medical sciences : the official journal of Isfahan University of Medical Sciences · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Dynamic Classification ofJournal of data science : JDS · 2022
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Feng-Chang LinDepartment of Biostatistics, University of North Carolina, Chapel Hill, North Carolina.ORCID 0000-0002-2638-1775
Quefeng LiDepartment of Biostatistics, University of North Carolina, Chapel Hill, North Carolina.ORCID 0000-0003-0707-2763
Jessica T LinInstitute of Global Health and Infectious Diseases, University of North Carolina, Chapel Hill, North Carolina.ORCID 0000-0002-4516-723X
University of North Carolina at Chapel Hill · US

Funding

Re-Entry Supplement: Investigation of Oral Microbial Enzymes for the Detection and Treatment of Periodontal DiseaseUL1TR002489 · NCATS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BUSE, JOHN BERNARD, SHAHEEN, NICHOLAS J · 2018 to 2022
$48.6M
Determinants of malaria transmission by submicroscopic gametocytemiaR01AI137395 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LIN, JESSICA · 2018 to 2022
$3.3M
Genetic determinants of Plasmodium vivax relapseK08AI110651 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LIN, JESSICA · 2014 to 2018
$869k
Plasmodium ovale hypnozoite development and relapse: a coordinated in vivo in vitro studyR21AI152260 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ADAMS, JOHN H, LIN, JESSICA · 2021 to 2022
$418k
NCATS NIH HHS UL1 TR002489NIAID NIH HHS K08 AI110651NIAID NIH HHS R01 AI137395NIAID NIH HHS R21 AI152260
6 · The paper itself

Abstract

In patients with Plasmodium vivax malaria treated with effective blood-stage therapy, the recurrent illness may occur due to relapse from latent liver-stage infection or reinfection from a new mosquito bite. Classification of the recurrent infection as either relapse or reinfection is critical when evaluating the efficacy of an anti-relapse treatment. Although one can use whether a shared genetic variant exists between baseline and recurrence genotypes to classify the outcome, little has been suggested to use both sharing and nonsharing variants to improve the classification accuracy. In this paper, we develop a novel classification criterion that utilizes transition likelihoods to distinguish relapse from reinfection. When tested in extensive simulation experiments with known outcomes, our classifier has superior operating characteristics. A real data set from 78 Cambodian P. vivax malaria patients was analyzed to demonstrate the practical use of our proposed method.

Indexed as

Malaria, VivaxReinfectionGenotypeHumansPlasmodium vivaxRecurrenceallelic variantamplicon deep sequencingmalaria relapsepenalized maximum likelihood estimationPlasmodium vivax

Identifiers

PMID32022247
PMCPMC8711853
OpenAlexW3005236604

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.