Evidence map›Paper›PMID 32020675›Full record

ArticleFASEB journal : official publication of the Federation of American Societies for Experimental Biology2020

DNA aptamers against the DUX4 protein reveal novel therapeutic implications for FSHD.

Christian Klingler, Jon Ashley, Ke Shi, Adeline Stiefvater, Michael Kyba, Michael Sinnreich, Hideki Aihara, Jochen Kinter

Open access · hybridAbstract read
In one paragraph

Article in FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
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  8. Influence ofInternational journal of molecular sciences · 2023
    Review
  9. Article
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  11. Review
  12. Article
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  14. Review
  15. Current Therapeutic Approaches in FSHD.Journal of neuromuscular diseases · 2021
    Review
  16. Review
  17. Review
  18. Therapeutic Strategies Targeting DUX4 in FSHD.Journal of clinical medicine · 2020
    Review
  19. Journal of personalized medicine · 2020
    Review
  20. DNA aptamers against the DUX4 protein reveal novel therapeutic implications for FSHD.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Christian KlinglerNeuromuscular Research Group, Department of Neurology, University Hospital Basel, Basel, Switzerland.
Jon AshleyNeuromuscular Research Group, Department of Neurology, University Hospital Basel, Basel, Switzerland.
Ke ShiDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, MN, USA.
Adeline StiefvaterNeuromuscular Research Group, Department of Neurology, University Hospital Basel, Basel, Switzerland.
Michael KybaLillehei Heart Institute, University of Minnesota, Minneapolis, MN, USA.
Michael SinnreichNeuromuscular Research Group, Department of Neurology, University Hospital Basel, Basel, Switzerland.
Hideki AiharaDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, MN, USA.
Jochen KinterNeuromuscular Research Group, Department of Neurology, University Hospital Basel, Basel, Switzerland.
University Hospital of Basel · CHUniversity of Minnesota · USDepartment of Biomedicine Basel · CH

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
Structural studies of viral replication and invasionR35GM118047 · NIGMS · UNIVERSITY OF MINNESOTA · PI Hideki Aihara · 2016 to 2026
$6.3M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
NIGMS NIH HHS P30 GM124165NIGMS NIH HHS R35 GM118047NIH HHS S10 OD021527
6 · The paper itself

Abstract

Aberrant expression of the transcription factor double homeobox protein 4 (DUX4) can lead to a number of diseases including facio-scapulo-humeral muscular dystrophy (FSHD), acute lymphoblastic leukemia, and sarcomas. Inhibition of DUX4 may represent a therapeutic strategy for these diseases. By applying Systematic Evolution of Ligands by EXponential Enrichment (SELEX), we identified aptamers against DUX4 with specific secondary structural elements conveying high affinity to DUX4 as assessed by fluorescence resonance energy transfer and fluorescence polarization techniques. Sequences analysis of these aptamers revealed the presence of two consensus DUX4 motifs in a reverse complementary fashion forming hairpins interspersed with bulge loops at distinct positions that enlarged the binding surface with the DUX4 protein, as determined by crystal structure analysis. We demonstrate that insertion of specific structural elements into transcription factor binding oligonucleotides can enhance specificity and affinity.

Indexed as

Aptamers, NucleotideHomeodomain ProteinsHumansMaleModels, MolecularMuscular Dystrophy, FacioscapulohumeralPAX7 Transcription FactorSELEX Aptamer TechniqueAptamers, NucleotideDUX4L1 protein, humanHomeodomain ProteinsPAX7 protein, humanPAX7 Transcription Factorbulge loopdecoyPAX7PROP1transcription factor

Identifiers

PMID32020675
PMCPMC7079142
OpenAlexW3004722810

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.