Evidence map›Paper›PMID 32019968›Full record

ArticleScientific reports2020

Phylogenomic Perspective on a Unique Mycobacterium bovis Clade Dominating Bovine Tuberculosis Infections among Cattle and Buffalos in Northern Brazil.

Marília Lima da Conceição, Emilyn Costa Conceição, Ismari Perini Furlaneto, Sandro Patroca da Silva, Arthur Emil Dos Santos Guimarães, Pedro Gomes, María Laura Boschiroli, Lorraine Michelet, Thomas Andreas Kohl, Katharina Kranzer and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
  3. Features ofMicroorganisms · 2023
    Article
  4. Article
  5. Review
  6. Genomic analysis ofFrontiers in veterinary science · 2022
    Article
  7. Genomic and temporal analyses ofMicrobial genomics · 2021
    Article
  8. Article
  9. Genetic Diversity and Potential Paths of Transmission ofFrontiers in veterinary science · 2021
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 5 countries.

Marília Lima da Conceição *State University of Pará, Belém, Brazil. marilimadc@msn.com.
Emilyn Costa Conceição *Federal University of Rio de Janeiro, Rio de Janeiro, Brazil.ORCID http://orcid.org/0000-0002-7445-6620
Ismari Perini FurlanetoState University of Pará, Belém, Brazil.
Sandro Patroca da SilvaEvandro Chagas Institute, Anandideua, Brazil.
Arthur Emil Dos Santos GuimarãesState University of Pará, Belém, Brazil.
Pedro GomesResearch Institute for Medicines (iMed.ULisboa), Faculty of Pharmacy, Universidade de Lisboa, Lisbon, Portugal.
María Laura BoschiroliFrench Agency for Food, Environmental and Occupational Health and Safety, Maisons-Alfort, France.
Lorraine MicheletFrench Agency for Food, Environmental and Occupational Health and Safety, Maisons-Alfort, France.
Thomas Andreas KohlLeibniz Research Center Borstel, Borstel, Germany.ORCID http://orcid.org/0000-0002-1126-6803
Katharina KranzerResearch Center Borstel Leibniz Lung Center, National Reference Center for Mycobacteria, Borstel, Germany.
Loreno da Costa FrancezFederal Rural University of Amazon, Belém, Brazil.
Luana Nepomuceno Gondim Costa LimaEvandro Chagas Institute, Anandideua, Brazil.
Isabel PortugalResearch Institute for Medicines (iMed.ULisboa), Faculty of Pharmacy, Universidade de Lisboa, Lisbon, Portugal.
João PerdigãoResearch Institute for Medicines (iMed.ULisboa), Faculty of Pharmacy, Universidade de Lisboa, Lisbon, Portugal. jperdigao@ff.ulisboa.pt.
Karla Valéria Batista LimaState University of Pará, Belém, Brazil.
University of Lisbon · PTUniversidade do Estado do Pará · BRAgence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail · FRInstituto Evandro Chagas · BRGerman Center for Infection Research · DEUniversidade Federal do Rio de Janeiro · BRUniversidade Federal Rural da Amazônia · BRUniversity of London · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lack of routine surveillance in countries endemic for bovine tuberculosis (TB) and limited laboratory support contributes to the inability to differentiate the Mycobacterium tuberculosis Complex species, leading to an underestimated burden of the disease. Here, Whole-Genome Sequencing of Mycobacterium bovis isolated from tissues with TB-like lesions obtained from cattle and buffalos at Marajó Island, Brazil, demonstrates that recent transmission of M. bovis is ongoing at distinct sites. Moreover, the M. bovis epidemiology in this setting is herein found to be dominated by an endemic and unique clade composed of strains evolved from a common ancestor that are now genetically differentiated from other M. bovis clades. Additionally, envisioning a rapid strain differentiation and tracing across multiple settings, 28 globally validated strain-specific SNPs were identified, three of which considered as robust markers for the M. bovis Marajó strain. In conclusion, this study contributes with data regarding the identification of a novel M. bovis phylogenetic clade responsible for ongoing transmission events in both cattle and buffalo species in Brazil, provides a framework to investigate the dissemination of this highly prevalent strain and, holds the potential to inform TB control strategies that may help to prevent the spread of bovine and zoonotic TB.

Indexed as

AnimalsBrazilBuffaloesCattleMycobacterium bovisMycobacterium tuberculosisPhylogenyPolymorphism, Single NucleotideTuberculosisTuberculosis, BovineWhole Genome SequencingZoonoses

Identifiers

PMID32019968
PMCPMC7000724
OpenAlexW3004535116

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.