Evidence map›Paper›PMID 32019923›Full record

ArticleNature communications2020

Abundance and diversity of resistomes differ between healthy human oral cavities and gut.

Victoria R Carr, Elizabeth A Witherden, Sunjae Lee, Saeed Shoaie, Peter Mullany, Gordon B Proctor, David Gomez-Cabrero, David L Moyes

Abstract readComparative Study
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Mapping the oral resistome: a systematic review.Journal of medical microbiology · 2024
    Pooled it
  2. Article
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  4. Review
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  6. Article
  7. Journal of oral microbiology · 2026
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  16. Avian-specificeLife · 2025
    Article
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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Victoria R CarrCentre for Host-Microbiome Interactions, Faculty of Dentistry, Oral and Craniofacial Sciences, King's College London, London, UK. victoria.carr@kcl.ac.uk.
Elizabeth A WitherdenCentre for Host-Microbiome Interactions, Faculty of Dentistry, Oral and Craniofacial Sciences, King's College London, London, UK.
Sunjae LeeCentre for Host-Microbiome Interactions, Faculty of Dentistry, Oral and Craniofacial Sciences, King's College London, London, UK.
Saeed ShoaieCentre for Host-Microbiome Interactions, Faculty of Dentistry, Oral and Craniofacial Sciences, King's College London, London, UK.ORCID http://orcid.org/0000-0001-5834-4533
Peter MullanyMicrobial Diseases, Eastman Dental Institute, University College London, London, UK.
Gordon B ProctorCentre for Host-Microbiome Interactions, Faculty of Dentistry, Oral and Craniofacial Sciences, King's College London, London, UK.ORCID http://orcid.org/0000-0002-5684-841X
David Gomez-Cabrero *Centre for Host-Microbiome Interactions, Faculty of Dentistry, Oral and Craniofacial Sciences, King's College London, London, UK.
David L Moyes *Centre for Host-Microbiome Interactions, Faculty of Dentistry, Oral and Craniofacial Sciences, King's College London, London, UK. david.moyes@kcl.ac.uk.

Funding

RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/M009513/1RCUK | Engineering and Physical Sciences Research Council (EPSRC) EP/S001301/1
6 · The paper itself

Abstract

The global threat of antimicrobial resistance has driven the use of high-throughput sequencing techniques to monitor the profile of resistance genes, known as the resistome, in microbial populations. The human oral cavity contains a poorly explored reservoir of these genes. Here we analyse and compare the resistome profiles of 788 oral cavities worldwide with paired stool metagenomes. We find country and body site-specific differences in the prevalence of antimicrobial resistance genes, classes and mechanisms in oral and stool samples. Within individuals, the highest abundances of antimicrobial resistance genes are found in the oral cavity, but the oral cavity contains a lower diversity of resistance genes compared to the gut. Additionally, co-occurrence analysis shows contrasting ARG-species associations between saliva and stool samples. Maintenance and persistence of antimicrobial resistance is likely to vary across different body sites. Thus, we highlight the importance of characterising the resistome across body sites to uncover the antimicrobial resistance potential in the human body.

Indexed as

Drug Resistance, BacterialAnti-Bacterial AgentsBacteriaBacterial ProteinsBiodiversityFecesGastrointestinal MicrobiomeHumansIntestinesMetagenomeMouthPhylogenyAnti-Bacterial AgentsBacterial Proteins

Identifiers

PMID32019923
PMCPMC7000725

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.