Evidence map›Paper›PMID 32019910›Full record

ArticleCell death & disease2020

Oncogene-dependent function of BRG1 in hepatocarcinogenesis.

Pan Wang, Xinhua Song, Dan Cao, Kairong Cui, Jingxiao Wang, Kirsten Utpatel, Runze Shang, Haichuan Wang, Li Che, Matthias Evert and 3 more

Open access · goldAbstract read
In one paragraph

Article in Cell death & disease, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Pooled it
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  15. On the Interaction Between SMARCAL1 and BRG1.Frontiers in cell and developmental biology · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 4 countries.

Pan Wang *Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA.
Xinhua Song *Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA.
Dan Cao *Department of Medical Oncology, Cancer Center, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu, Sichuan, China.
Kairong CuiSystems Biology Center, NHLBI, NIH, 9000 Rockville Pike, Bethesda, MD, 20892, USA.
Jingxiao WangDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA.
Kirsten UtpatelInstitute of Pathology, University of Regensburg, Regensburg, Germany.
Runze ShangDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA.
Haichuan WangDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-6886-5698
Li CheDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-7971-8725
Matthias EvertInstitute of Pathology, University of Regensburg, Regensburg, Germany.
Keji ZhaoSystems Biology Center, NHLBI, NIH, 9000 Rockville Pike, Bethesda, MD, 20892, USA.
Diego F CalvisiInstitute of Pathology, University of Regensburg, Regensburg, Germany. diego.calvisi@klinik.uni-regensburg.de.
Xin ChenDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA. xin.chen@ucsf.edu.ORCID http://orcid.org/0000-0002-9588-0164
University of California, San Francisco · USNational Heart Lung and Blood Institute · USUniversity of Regensburg · DESichuan University · CNUniversity of Sassari · IT

Funding

UCSF Liver Core CenterP30DK026743 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Holger Willenbring · 1986 to 2026
$30.7M
Genome-wide mapping of histone modificationsZIAHL005801 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHAO, KEJI · 2009 to 2025
$24.0M
Epigenetic Regulation of Hematopoietic Stem CellsZIAHL006031 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHAO, KEJI · 2009 to 2025
$16.6M
Molecular Genetics of Liver CancersR01CA136606 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHEN, XIN · 2009 to 2016
$2.6M
SWI/SNF complex in mouse HCC developmentR03CA208215 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHEN, XIN · 2017 to 2018
$159k
NCI NIH HHS R01 CA136606NCI NIH HHS R03 CA208215NIDDK NIH HHS P30 DK026743
6 · The paper itself

Abstract

Hepatocellular carcinoma (HCC) is the major type of primary liver cancer. Genomic studies have revealed that HCC is a heterogeneous disease with multiple subtypes. BRG1, encoded by the SMARCA4 gene, is a key component of SWI/SNF chromatin-remodeling complexes. Based on TCGA studies, somatic mutations of SMARCA4 occur in ~3% of human HCC samples. Additional studies suggest that BRG1 is overexpressed in human HCC specimens and may promote HCC growth and invasion. However, the precise functional roles of BRG1 in HCC remain poorly delineated. Here, we analyzed BRG1 in human HCC samples as well as in mouse models. We found that BRG1 is overexpressed in most of human HCC samples, especially in those associated with poorer prognosis. BRG1 expression levels positively correlate with cell cycle and negatively with metabolic pathways in the Cancer Genome Atlas (TCGA) human HCC data set. In a murine HCC model induced by c-MYC overexpression, ablation of the Brg1 gene completely repressed HCC formation. In striking contrast, however, we discovered that concomitant deletion of Brg1 and overexpression of c-Met or mutant NRas (NRAS

Indexed as

Genes, Tumor SuppressorOncogenesAnimalsCarcinogenesisCarcinoma, HepatocellularDatabases, GeneticDNA HelicasesFemaleGene Expression Regulation, NeoplasticGenes, rasHepatocytesHumansLiver NeoplasmsMaleMice, Inbred C57BLMice, KnockoutDNA HelicasesNuclear ProteinsProto-Oncogene Proteins c-metSMARCA4 protein, humanSmarca4 protein, mouseTranscription Factors

Identifiers

PMID32019910
PMCPMC7000409
OpenAlexW3004661698

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.