Evidence map›Paper›PMID 32019797›Full record

Observational studymBio2020

Genome-Wide Association Study of Cryptosporidiosis in Infants Implicates

Genevieve L Wojcik, Poonum Korpe, Chelsea Marie, Alexander J Mentzer, Tommy Carstensen, Josyf Mychaleckyj, Beth D Kirkpatrick, Stephen S Rich, Patrick Concannon, A S G Faruque and 3 more

Open access · goldAbstract readObservational Study
In one paragraph

Observational study in mBio, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Protein Kinase C-α Is a Gatekeeper ofInfection and immunity · 2022
    Article
  10. Forward Genetics in Apicomplexa Biology: The Host Side of the Story.Frontiers in cellular and infection microbiology · 2022
    Review
  11. Megasphaera in the Stool Microbiota Is Negatively Associated With Diarrheal Cryptosporidiosis.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2021
    Observational
  12. Article
  13. Review
  14. Observational
  15. Frontiers in veterinary science · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 9 institutions in 3 countries.

Genevieve L WojcikDepartment of Biomedical Data Science, Stanford University School of Medicine, Stanford, California, USA.
Poonum KorpeDepartment of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA.
Chelsea MarieDepartment of Medicine, Infectious Diseases and International Health, University of Virginia School of Medicine, Charlottesville, Virginia, USA.
Alexander J MentzerWellcome Trust Sanger Institute, University of Oxford, Oxford, United Kingdom.
Tommy CarstensenDepartment of Medicine, University of Cambridge, Cambridge, United Kingdom.
Josyf MychaleckyjCenter for Public Health Genomics, Department of Public Health Sciences, University of Virginia, Charlottesville, Virginia, USA.
Beth D KirkpatrickUniversity of Vermont College of Medicine and Vaccine Testing Center, Burlington, Vermont, USA.
Stephen S RichCenter for Public Health Genomics, Department of Public Health Sciences, University of Virginia, Charlottesville, Virginia, USA.
Patrick ConcannonGenetics Institute and Department of Pathology, Immunology and Laboratory Medicine, University of Florida, Gainesville, Florida, USA.
A S G FaruqueInternational Centre for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh.
Rashidul HaqueInternational Centre for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh.
William A PetriDepartment of Medicine, Infectious Diseases and International Health, University of Virginia School of Medicine, Charlottesville, Virginia, USA.
Priya DuggalDepartment of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA pduggal@jhu.edu.
University of Virginia · USInternational Centre for Diarrhoeal Disease Research · BDJohns Hopkins University · USOffice of Public Health Genomics · USStanford University · USUniversity of Cambridge · GBUniversity of Florida · USUniversity of Vermont · USWellcome Sanger Institute · GB

Funding

FIELD STUDIES OF IMMUNITY TO AMEBIASIS IN BANGLADESHR01AI043596 · NIAID · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI CAROL A GILCHRIST, William A Petri · 1998 to 2026
$7.7M
Role of CREM in Amebic Colitis and Inflammatory Bowel DiseaseR37AI026649 · NIAID · UNIVERSITY OF VIRGINIA · PI William A Petri · 2018 to 2026
$5.0M
Role of Host Protein Kinase C in CryptosporidiosisR01AI148518 · NIAID · UNIVERSITY OF VIRGINIA · PI MARIE, CHELSEA S. · 2020 to 2024
$3.3M
Passive and Acquired Immunity to Cryptosporidiosis in Bangladeshi ChildrenK23AI108790 · NIAID · UNIVERSITY OF VIRGINIA · PI KORPE, POONUM S. · 2014 to 2018
$876k
NIAID NIH HHS K23 AI108790NIAID NIH HHS R01 AI043596NIAID NIH HHS R01 AI148518NIAID NIH HHS R37 AI026649
6 · The paper itself

Abstract

Diarrhea is a major cause of both morbidity and mortality worldwide, especially among young children. Cryptosporidiosis is a leading cause of diarrhea in children, particularly in South Asia and sub-Saharan Africa, where it is responsible for over 200,000 deaths per year. Beyond the initial clinical presentation of diarrhea, it is associated with long-term sequelae such as malnutrition and neurocognitive developmental deficits. Risk factors include poverty and overcrowding, and yet not all children with these risk factors and exposure are infected, nor do all infected children develop symptomatic disease. One potential risk factor to explain these differences is their human genome. To identify genetic variants associated with symptomatic cryptosporidiosis, we conducted a genome-wide association study (GWAS) examining 6.5 million single nucleotide polymorphisms (SNPs) in 873 children from three independent cohorts in Dhaka, Bangladesh, namely, the Dhaka Birth Cohort (DBC), the Performance of Rotavirus and Oral Polio Vaccines in Developing Countries (PROVIDE) study, and the Cryptosporidiosis Birth Cohort (CBC). Associations were estimated separately for each cohort under an additive model, adjusting for length-for-age Z-score at 12 months of age, the first two principal components to account for population substructure, and genotyping batch. The strongest meta-analytic association was with rs58296998 (

Indexed as

Genome, HumanPolymorphism, Single NucleotideBangladeshCryptosporidiosisCryptosporidiumDiarrheaDisease SusceptibilityFecesFemaleGenome-Wide Association StudyHumansInfantInfant, NewbornMaleMeta-Analysis as TopicProspective StudiesPRKCA protein, humanProtein Kinase C-alphaCryptosporidiumgeneticsgenome analysis

Identifiers

PMID32019797
PMCPMC7002356
OpenAlexW3005418939

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.