Evidence map›Paper›PMID 32019538›Full record

Trial reportRespiratory research2020

Congenital cystic adenomatoid malformations of the lung: an epithelial transcriptomic approach.

Guillaume Lezmi, Shamila Vibhushan, Claudia Bevilaqua, Nicolas Crapart, Nicolas Cagnard, Naziha Khen-Dunlop, Christine Boyle-Freyssaut, Alice Hadchouel, Christophe Delacourt

Registry-linked trialOpen access · goldAbstract readClinical Trial
In one paragraph

Trial report in Respiratory research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01732185 (Genetic and Molecular Abnormalities in Congenital Cystic Adenomatoid Malformations), which is not on this map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01732185 nacompletednot on this map

Genetic and Molecular Abnormalities in Congenital Cystic Adenomatoid Malformations

TypeinterventionalSponsorAssistance Publique - Hôpitaux de ParisRan2012 to 2015Enrolled45ConditionsCongenital Cystic Adenomatoid Malformation (CCAM)ArmsPatient
3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
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  5. Article
  6. Deletion ofDisease models & mechanisms · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Guillaume LezmiService de Pneumologie et d'Allergologie Pédiatriques, AP-HP, Hôpital Universitaire Necker-Enfants Malades, 75743 Cedex 15, Paris, France.
Shamila VibhushanINSERM, U955, Institut Mondor de Recherche Biomedicale (IMRB), Equipe 4, 94000, Créteil, France.
Claudia BevilaquaInstitut National de la Recherche Agronomique (INRA), AgroParisTech, Université Paris-Saclay, Jouy en Josas, France.
Nicolas CrapartInstitut National de la Recherche Agronomique (INRA), AgroParisTech, Université Paris-Saclay, Jouy en Josas, France.
Nicolas CagnardInserm UMR1163, Imagine Institute, Genomics Core Facility, Paris, France.
Naziha Khen-DunlopParis Descartes University, Paris, France.
Christine Boyle-FreyssautInserm UMR1163, Imagine Institute, Genomics Core Facility, Paris, France.
Alice HadchouelService de Pneumologie et d'Allergologie Pédiatriques, AP-HP, Hôpital Universitaire Necker-Enfants Malades, 75743 Cedex 15, Paris, France.
Christophe DelacourtService de Pneumologie et d'Allergologie Pédiatriques, AP-HP, Hôpital Universitaire Necker-Enfants Malades, 75743 Cedex 15, Paris, France. christophe.delacourt@aphp.fr.ORCID http://orcid.org/0000-0002-0007-7150
Délégation Paris 5 · FRInserm · FRAgroParisTech · FR

Funding

Assistance Publique - Hôpitaux de Paris PHRC 2012-A00538-35
6 · The paper itself

Abstract

backgroundThe pathophysiology of congenital cystic adenomatoid malformations (CCAM) of the lung remains poorly understood.

aimThis study aimed to identify more precisely the molecular mechanisms limited to a compartment of lung tissue, through a transcriptomic analysis of the epithelium of macrocystic forms.

methodsTissue fragments displaying CCAM were obtained during planned surgical resections. Epithelial mRNA was obtained from cystic and normal areas after laser capture microdissection (LCM). Transcriptomic analyses were performed and the results were confirmed by RT-PCR and immunohistochemistry in independent samples.

resultsAfter controlling for RNA quality, we analysed the transcriptomes of six cystic areas and five control areas. In total, 393 transcripts were differentially expressed in the epithelium, between CCAM and control areas. The most highly redundant genes involved in biological functions and signalling pathways differentially expressed between CCAM and control epithelium included TGFB2, TGFBR1, and MAP 2 K1. These genes were considered particularly relevant as they have been implicated in branching morphogenesis. RT-qPCR analysis confirmed in independent samples that TGFBR1 was more strongly expressed in CCAM than in control tissues (p < 0.03). Immunohistochemistry analysis showed TGFBR1 (p = 0.0007) and TGFB2 (p < 0.02) levels to be significantly higher in the epithelium of CCAM than in that of control tissues.

conclusionsThis compartmentalised transcriptomic analysis of the epithelium of macrocystic lung malformations identified a dysregulation of TGFB signalling at the mRNA and protein levels, suggesting a possible role of this pathway in CCAM pathogenesis.

trial registrationClinicalTrials.gov Identifier: NCT01732185.

Indexed as

Cystic Adenomatoid Malformation of Lung, CongenitalEarly Growth Response Transcription FactorsFemaleFollow-Up StudiesGene Expression ProfilingHumansInfantKruppel-Like Transcription FactorsLaser Capture MicrodissectionMaleProspective StudiesRespiratory MucosaRNA, MessengerEarly Growth Response Transcription FactorsKLF10 protein, humanKruppel-Like Transcription FactorsRNA, MessengerCongenital thoracic malformationsCystic lungLaser capture microdissectionTranscriptomeTransforming growth factor

Identifiers

PMID32019538
PMCPMC7001206
OpenAlexW3012791869

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.