Evidence map›Paper›PMID 32016821›Full record

ReviewDigestive diseases and sciences2020

Gut-host Crosstalk: Methodological and Computational Challenges.

Ivan Ivanov

Abstract readReview
In one paragraph

Review in Digestive diseases and sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Ivan IvanovDepartment of Veterinary Physiology and Pharmacology, Texas A&M University, College Station, USA. ivanov@tamu.edu.

Funding

Dietary and microbial predictors of childhood obesity riskR01DK107561 · NIDDK · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI CHAPKIN, ROBERT STEPHEN, DONOVAN, SHARON MARIE · 2017 to 2021
$2.8M
NIDDK NIH HHS R01 DK107561
6 · The paper itself

Abstract

Understanding how health-promoting microbiota are established and their beneficial interactions with the host is of critical biomedical importance. The current high throughput data acquisition technologies allow for integrating components of the gut ecosystem. The richness of data types and large number of measured variables involved underscores the critical importance of the appropriate choice of analytical and computational methods that can be used to model this complex ecosystem. This review outlines currently used approaches to perform analyses of data obtained as a result of interrogation of the gut-microbiota ecosystem and the challenges associated with these methodological and computational efforts. The problem of large dimensionality versus small numbers of samples is explained with discussions of clustering, dimensionality reduction, and statistical testing. Predictive modeling and data integration specific to the gut ecosystem are also discussed.

Indexed as

AnimalsComputational BiologyGastrointestinal MicrobiomeGastrointestinal TractHost Microbial InteractionsHumansMetabolomicsData integrationGut-host crosstalkPredictive computational modeling

Identifiers

PMID32016821
PMCPMC7176510

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.