Evidence map›Paper›PMID 32015553›Full record

ArticleNature structural & molecular biology2020

How mouse RAG recombinase avoids DNA transposition.

Xuemin Chen, Yanxiang Cui, Huaibin Wang, Z Hong Zhou, Martin Gellert, Wei Yang

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
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  4. How RAG1/2 evolved from ancestral transposases to initiate V(D)J recombination without transposition.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  8. Review
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  18. The flexible and iterative steps within the NHEJ pathway.Progress in biophysics and molecular biology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Xuemin ChenLaboratory of Molecular Biology, NIDDK, National Institutes of Health, Bethesda, MD, USA.ORCID http://orcid.org/0000-0002-1818-9206
Yanxiang CuiCalifornia NanoSystems Institute, University of California, Los Angeles, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-8909-6576
Huaibin WangLaboratory of Molecular Biology, NIDDK, National Institutes of Health, Bethesda, MD, USA.
Z Hong ZhouCalifornia NanoSystems Institute, University of California, Los Angeles, Los Angeles, CA, USA.
Martin GellertLaboratory of Molecular Biology, NIDDK, National Institutes of Health, Bethesda, MD, USA. martinge@niddk.nih.gov.ORCID http://orcid.org/0000-0002-0832-4929
Wei YangLaboratory of Molecular Biology, NIDDK, National Institutes of Health, Bethesda, MD, USA. weiy@niddk.nih.gov.ORCID http://orcid.org/0000-0002-3591-2195
National Institutes of Health · USCalifornia NanoSystems Institute · US

Funding

Structural studies of the post-cleavage complex in V(D)J recombinationZIADK036167 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI GELLERT, MARTIN F. · 2009 to 2025
$21.4M
Structural and mechanistic studies of V(D)J recombinationZIADK036147 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI YANG, WEI · 2009 to 2025
$6.6M
High-Resolution CryoEM Reconstruction of Large ComplexesR01GM071940 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ZHOU, Z HONG · 2006 to 2025
$5.0M
West/Midwest Consortium for High-Resolution Cryo Electron MicroscopyU24GM116792 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AGBANDJE-MCKENNA, MAVIS, DOKLAND, TERJE · 2016 to 2020
$3.0M
HIGH-END CRYOEM INSTRUMENT FOR UCLA ELECTRON IMAGING CTR FOR NANOMACHINES: AIDSS10RR023057 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHOU, Z HONG · 2006 to 2006
$1.6M
The post-cleavage complex in V(D)J recombinationZ01DK036167 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI GELLERT, MARTIN F. · 2007 to 2008
$1.1M
Structural Study Of DNA Recombination, Repair, ReplicatZ01DK036119 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI YANG, WEI · 1996 to 2008
$664k
Structural and mechanistic studies of V(D)J recombinationZ01DK036147 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI YANG, WEI · 2007 to 2008
$601k
Structural and mechanistic studies of RNase H and HIV reverse transcriptaseZ01DK036144 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI YANG, WEI · 2007 to 2008
$601k
Direct Detection Device for atomic resolution cryoEM of macromolecular complexesS10OD018111 · OD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHOU, Z HONG · 2014 to 2014
$598k
STUDIES OF IMMUNOGLOBULIN GENE REARRANGEMENTZ01DK033001 · NIDDK · DIABETES, DIGESTIVE, KIDNEY DISEASES · PI GELLERT, MARTIN F. · 1986 to 2006
–
Intramural NIH HHS Z01 DK033001Intramural NIH HHS Z01 DK036119Intramural NIH HHS Z01 DK036144Intramural NIH HHS Z01 DK036147Intramural NIH HHS Z01 DK036167NCRR NIH HHS S10 RR023057NIGMS NIH HHS R01 GM071940NIGMS NIH HHS U24 GM116792NIH HHS S10 OD018111
6 · The paper itself

Abstract

The RAG1-RAG2 recombinase (RAG) cleaves DNA to initiate V(D)J recombination, but RAG also belongs to the RNH-type transposase family. To learn how RAG-catalyzed transposition is inhibited in developing lymphocytes, we determined the structure of a DNA-strand transfer complex of mouse RAG at 3.1-Å resolution. The target DNA is a T form (T for transpositional target), which contains two >80° kinks towards the minor groove, only 3 bp apart. RAG2, a late evolutionary addition in V(D)J recombination, appears to enforce the sharp kinks and additional inter-segment twisting in target DNA and thus attenuates unwanted transposition. In contrast to strand transfer complexes of genuine transposases, where severe kinks occur at the integration sites of target DNA and thus prevent the reverse reaction, the sharp kink with RAG is 1 bp away from the integration site. As a result, RAG efficiently catalyzes the disintegration reaction that restores the RSS (donor) and target DNA.

Indexed as

AnimalsCryoelectron MicroscopyDNADNA-Binding ProteinsDNA CleavageHEK293 CellsHomeodomain ProteinsHumansMiceModels, MolecularNucleic Acid ConformationProtein ConformationDNADNA-Binding ProteinsHomeodomain ProteinsRAG-1 proteinRag2 protein, mouse

Identifiers

PMID32015553
PMCPMC8291384
OpenAlexW3004050930

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.