Evidence map›Paper›PMID 32015526›Full record

ArticleNature genetics2020

Genomic landscape of lung adenocarcinoma in East Asians.

Jianbin Chen, Hechuan Yang, Audrey Su Min Teo, Lidyana Bte Amer, Faranak Ghazi Sherbaf, Chu Quan Tan, Jacob Josiah Santiago Alvarez, Bingxin Lu, Jia Qi Lim, Angela Takano and 33 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 313 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
313citing papers in PubMed, 3 pooled it
30.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

313 citing papers in PubMed, 3 syntheses or guidelines pooled it, 530 citations in OpenAlex.

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253 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors at 6 institutions in 4 countries.

Jianbin ChenGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.ORCID http://orcid.org/0000-0002-9430-5838
Hechuan YangGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Audrey Su Min TeoGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Lidyana Bte AmerGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Faranak Ghazi SherbafGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Chu Quan TanGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Jacob Josiah Santiago AlvarezGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Bingxin LuGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Jia Qi LimGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Angela TakanoDepartment of Anatomical Pathology, Singapore General Hospital, Singapore, Singapore.
Rahul NaharGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Yin Yeng LeeGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Cheryl Zi Jin PhuaGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Khi Pin ChuaGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Lisda SutejaDivision of Medical Oncology, National Cancer Centre Singapore, Singapore, Singapore.
Pauline Jieqi ChenGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Mei Mei ChangGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Tina Puay Theng KohSurgical Oncology, National Cancer Centre Singapore, Singapore, Singapore.
Boon-Hean OngDepartment of Cardiothoracic Surgery, National Heart Centre Singapore, Singapore, Singapore.
Devanand AnanthamDepartment of Respiratory & Critical Care Medicine, Singapore General Hospital, Singapore, Singapore.
Anne Ann Ling HsuDepartment of Respiratory & Critical Care Medicine, Singapore General Hospital, Singapore, Singapore.
Apoorva GognaDepartment of Vascular & Interventional Radiology, Singapore General Hospital, Singapore, Singapore.
Chow Wei TooDepartment of Vascular & Interventional Radiology, Singapore General Hospital, Singapore, Singapore.
Zaw Win AungDivision of Clinical Trials and Epidemiological Sciences, National Cancer Centre Singapore, Singapore, Singapore.
Yi Fei LeeGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Lanying WangDivision of Clinical Trials and Epidemiological Sciences, National Cancer Centre Singapore, Singapore, Singapore.
Tony Kiat Hon LimDepartment of Anatomical Pathology, Singapore General Hospital, Singapore, Singapore.
Andreas WilmGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Poh Sum ChoiGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Poh Yong NgGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Chee Keong TohDivision of Medical Oncology, National Cancer Centre Singapore, Singapore, Singapore.
Wan-Teck LimDivision of Medical Oncology, National Cancer Centre Singapore, Singapore, Singapore.
Siming MaGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Bing LimGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.ORCID http://orcid.org/0000-0001-9534-6781
Jin LiuCentre for Quantitative Medicine, Program in Health Services and Systems Research, Duke-NUS Medical School, Singapore, Singapore.ORCID http://orcid.org/0000-0002-5707-2078
Wai Leong TamGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.ORCID http://orcid.org/0000-0003-2365-5264
Anders Jacobsen SkanderupGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.ORCID http://orcid.org/0000-0001-6847-4980
Joe Poh Sheng YeongDepartment of Anatomical Pathology, Singapore General Hospital, Singapore, Singapore.
Eng-Huat TanDivision of Medical Oncology, National Cancer Centre Singapore, Singapore, Singapore.
Caretha L CreasyOncology R&D, GlaxoSmithKline, Collegeville, PA, USA.
Daniel Shao Weng TanGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore. daniel.tan.s.w@nccs.com.sg.ORCID http://orcid.org/0000-0002-6514-6786
Axel M HillmerGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore. ahillmer@uni-koeln.de.ORCID http://orcid.org/0000-0002-3381-7266
Weiwei ZhaiGenome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore. weiweizhai@ioz.ac.cn.ORCID http://orcid.org/0000-0001-7938-0226
Agency for Science, Technology and Research · SGNational Cancer Centre Singapore · SGSingapore General Hospital · SGDuke-NUS Medical School · SGGlaxoSmithKline (United States) · USNational Heart Centre Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lung cancer is the world's leading cause of cancer death and shows strong ancestry disparities. By sequencing and assembling a large genomic and transcriptomic dataset of lung adenocarcinoma (LUAD) in individuals of East Asian ancestry (EAS; n = 305), we found that East Asian LUADs had more stable genomes characterized by fewer mutations and fewer copy number alterations than LUADs from individuals of European ancestry. This difference is much stronger in smokers as compared to nonsmokers. Transcriptomic clustering identified a new EAS-specific LUAD subgroup with a less complex genomic profile and upregulated immune-related genes, allowing the possibility of immunotherapy-based approaches. Integrative analysis across clinical and molecular features showed the importance of molecular phenotypes in patient prognostic stratification. EAS LUADs had better prediction accuracy than those of European ancestry, potentially due to their less complex genomic architecture. This study elucidated a comprehensive genomic landscape of EAS LUADs and highlighted important ancestry differences between the two cohorts.

Indexed as

MutationAdenocarcinoma of LungAgedAsian PeopleCohort StudiesDNA Copy Number VariationsErbB ReceptorsExomeFemaleGene Expression ProfilingHumansLung NeoplasmsMaleMiddle AgedProto-Oncogene Proteins p21(ras)SingaporeEGFR protein, humanErbB ReceptorsKRAS protein, humanProto-Oncogene Proteins p21(ras)TP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID32015526
OpenAlexW3004318979

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.