Evidence map›Paper›PMID 32015435›Full record

ArticleNature cell biology2020

Ribosomes guide pachytene piRNA formation on long intergenic piRNA precursors.

Yu H Sun, Jiang Zhu, Li Huitong Xie, Ziwei Li, Rajyalakshmi Meduri, Xiaopeng Zhu, Chi Song, Chen Chen, Emiliano P Ricci, Zhiping Weng and 1 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature cell biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
15.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. The pachytene-specific lncRNANon-coding RNA research · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Enigmatic Pachytene PIWI-Interacting RNAs.Genome biology and evolution · 2024
    Review
  8. Review
  9. Article
  10. Article
  11. The birth of piRNAs: how mammalian piRNAs are produced, originated, and evolved.Mammalian genome : official journal of the International Mammalian Genome Society · 2022
    Review
  12. Small ORFs as New Regulators of Pri-miRNAs and miRNAs Expression inInternational journal of molecular sciences · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Yu H SunCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, USA.ORCID http://orcid.org/0000-0003-0333-2898
Jiang Zhu *Center for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, USA.
Li Huitong Xie *Center for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, USA.
Ziwei Li *Center for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, USA.
Rajyalakshmi MeduriCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, USA.
Xiaopeng ZhuComputational Biology Department, Carnegie Mellon University, Pittsburgh, PA, USA.
Chi SongCollege of Public Health, Division of Biostatistics, The Ohio State University, Columbus, OH, USA.ORCID http://orcid.org/0000-0003-1108-1750
Chen ChenDepartment of Animal Science, Michigan State University, East Lansing, MI, USA.
Emiliano P RicciUniversité de Lyon, ENSL, UCBL, INSERM, CNRS, LBMC, Lyon, France.
Zhiping WengProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA.
Xin Zhiguo LiCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, USA. Xin_Li@urmc.rochester.edu.ORCID http://orcid.org/0000-0001-6803-4600
University of Rochester Medical Center · USCarnegie Mellon University · USMichigan State University · USThe Ohio State University · USUniversité Claude Bernard Lyon 1 · FRUniversity of Massachusetts Chan Medical School · US

Funding

Tudor Domain Proteins in Germline Genome DefenseR01HD084494 · NICHD · MICHIGAN STATE UNIVERSITY · PI CHEN, CHEN · 2015 to 2023
$3.0M
Define piRNA biogenesis and function in miceR35GM128782 · NIGMS · UNIVERSITY OF ROCHESTER · PI LI, XIN · 2018 to 2022
$2.0M
Mitochondria-anchored protein complexes in piRNA biogenesis and functionR01GM132490 · NIGMS · MICHIGAN STATE UNIVERSITY · PI CHEN, CHEN · 2019 to 2022
$1.2M
Dissect the piRNA regulatory mechanism during spermatogenesisR00HD078482 · NICHD · UNIVERSITY OF ROCHESTER · PI LI, XIN · 2015 to 2017
$729k
Dissect the piRNA regulatory mechanism during spermatogenesisK99HD078482 · NICHD · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LI, XIN · 2014 to 2014
$90k
NICHD NIH HHS R00 HD078482NICHD NIH HHS R01 HD084494NIGMS NIH HHS R01 GM132490NIGMS NIH HHS R35 GM128782U.S. Department of Health & Human Services | NIH | Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) K99/R00HD078482U.S. Department of Health & Human Services | NIH | Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) R01HD084494
6 · The paper itself

Abstract

PIWI-interacting RNAs (piRNAs) are a class of small non-coding RNAs essential for fertility. In adult mouse testes, most piRNAs are derived from long single-stranded RNAs lacking annotated open reading frames (ORFs). The mechanisms underlying how piRNA sequences are defined during the cleavages of piRNA precursors remain elusive. Here, we show that 80S ribosomes translate the 5'-proximal short ORFs (uORFs) of piRNA precursors. The MOV10L1/Armitage RNA helicase then facilitates the translocation of ribosomes into the uORF downstream regions (UDRs). The ribosome-bound UDRs are targeted by piRNA processing machinery, with the processed ribosome-protected regions becoming piRNAs. The dual modes of interaction between ribosomes and piRNA precursors underlie the distinct piRNA biogenesis requirements at uORFs and UDRs. Ribosomes also mediate piRNA processing in roosters and green lizards, implying that this mechanism is evolutionarily conserved in amniotes. Our results uncover a function for ribosomes on non-coding regions of RNAs and reveal the mechanisms underlying how piRNAs are defined.

Indexed as

AnimalsChickensComputational BiologyLizardsMaleMiceMitochondriaMitochondrial ProteinsOpen Reading FramesPachytene StagePhospholipase DProtein BindingProtein BiosynthesisProteinsRibosomesRNA-Binding ProteinsMitochondrial ProteinsmitoPLD protein, mouseMov10l1 protein, mousePhospholipase DProteinsRNA-Binding ProteinsRNA HelicasesRNA PrecursorsRNA, Small InterferingTdrd5 protein, mouseTdrkh protein, mouseVdac1 protein, mouseVoltage-Dependent Anion Channel 1

Identifiers

PMID32015435
PMCPMC8041231
OpenAlexW3003769412

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.