Evidence map›Paper›PMID 32015393›Full record

ArticleScientific reports2020

Machine learning decodes chemical features to identify novel agonists of a moth odorant receptor.

Gabriela Caballero-Vidal, Cédric Bouysset, Hubert Grunig, Sébastien Fiorucci, Nicolas Montagné, Jérôme Golebiowski, Emmanuelle Jacquin-Joly

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Accelerating Ligand Discovery for Insect Odorant Receptors.International journal of biological sciences · 2025
    Article
  6. Article
  7. Proceedings. Biological sciences · 2022
    Review
  8. Article
  9. Article
  10. Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Gabriela Caballero-Vidal *INRAE, Sorbonne Université, CNRS, IRD, UPEC, Université Paris Diderot, Institute of Ecology and Environmental Sciences of Paris, Paris, Versailles, France.
Cédric Bouysset *Institute of Chemistry of Nice, UMR CNRS 7272, Université Côte d'Azur, Nice, France.ORCID http://orcid.org/0000-0002-7814-8158
Hubert GrunigInstitute of Chemistry of Nice, UMR CNRS 7272, Université Côte d'Azur, Nice, France.
Sébastien FiorucciInstitute of Chemistry of Nice, UMR CNRS 7272, Université Côte d'Azur, Nice, France.ORCID http://orcid.org/0000-0003-2245-0478
Nicolas MontagnéINRAE, Sorbonne Université, CNRS, IRD, UPEC, Université Paris Diderot, Institute of Ecology and Environmental Sciences of Paris, Paris, Versailles, France. nicolas.montagne@sorbonne-universite.fr.
Jérôme GolebiowskiInstitute of Chemistry of Nice, UMR CNRS 7272, Université Côte d'Azur, Nice, France. jerome.golebiowski@unice.fr.
Emmanuelle Jacquin-JolyINRAE, Sorbonne Université, CNRS, IRD, UPEC, Université Paris Diderot, Institute of Ecology and Environmental Sciences of Paris, Paris, Versailles, France. emmanuelle.joly@inrae.fr.ORCID http://orcid.org/0000-0002-6904-2036
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Odorant receptors expressed at the peripheral olfactory organs are key proteins for animal volatile sensing. Although they determine the odor space of a given species, their functional characterization is a long process and remains limited. To date, machine learning virtual screening has been used to predict new ligands for such receptors in both mammals and insects, using chemical features of known ligands. In insects, such approach is yet limited to Diptera, whereas insect odorant receptors are known to be highly divergent between orders. Here, we extend this strategy to a Lepidoptera receptor, SlitOR25, involved in the recognition of attractive odorants in the crop pest Spodoptera littoralis larvae. Virtual screening of 3 million molecules predicted 32 purchasable ones whose function has been systematically tested on SlitOR25, revealing 11 novel agonists with a success rate of 28%. Our results show that Support Vector Machine optimizes the discovery of novel agonists and expands the chemical space of a Lepidoptera OR. More, it opens up structure-function relationship analyses through a comparison of the agonist chemical structures. This proof-of-concept in a crop pest could ultimately enable the identification of OR agonists or antagonists, capable of modifying olfactory behaviors in a context of biocontrol.

Indexed as

AcetophenonesAlcoholsAldehydesAnimalsComputer SimulationDose-Response Relationship, DrugDrosophila ProteinsDrug Evaluation, PreclinicalInsect ProteinsLigandsOdorantsProof of Concept StudyReceptors, OdorantSpodopteraSupport Vector MachineAcetophenonesAlcoholsAldehydesDrosophila ProteinsInsect ProteinsLigandsReceptors, Odorant

Identifiers

PMID32015393
PMCPMC6997167
OpenAlexW3003478287

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.