Evidence map›Paper›PMID 32015120›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

M2 amphipathic helices facilitate pH-dependent conformational transition in influenza A virus.

Hedieh Torabifard, Afra Panahi, Charles L Brooks

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  5. Activation of the influenza B M2 proton channel (BM2).bioRxiv : the preprint server for biology · 2024
    Article
  6. How to Sample Dozens of Substitutions per Site with λ Dynamics.Journal of chemical theory and computation · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Hedieh TorabifardDepartment of Chemistry, University of Michigan, Ann Arbor, MI 48109.
Afra PanahiDepartment of Chemistry and Biochemistry, California State University, San Marcos, CA 92096.
Charles L BrooksDepartment of Chemistry, University of Michigan, Ann Arbor, MI 48109; brookscl@umich.edu.ORCID 0000-0002-8149-5417
University of Michigan · USCalifornia State University, San Marcos · US

Funding

Theory and Modeling of Biomolecules and their Interactions - Equipment SupplementR35GM130587 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CHARLES L BROOKS · 2019 to 2026
$6.9M
Theoretical Studies of Receptor-Ligand InteractionsR01GM037554 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BROOKS, CHARLES L · 1987 to 2018
$3.8M
CHARMM Modernization, Performance, and Continued DevelopmentR01GM103695 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BROOKS, CHARLES L · 2012 to 2018
$3.1M
Acid-mediated processes in nucleic acids and proteinsR01GM107233 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BROOKS, CHARLES L · 2014 to 2017
$1.1M
NIGMS NIH HHS R01 GM037554NIGMS NIH HHS R01 GM103695NIGMS NIH HHS R01 GM107233NIGMS NIH HHS R35 GM130587
6 · The paper itself

Abstract

The matrix-2 (M2) protein from influenza A virus is a tetrameric, integral transmembrane (TM) protein that plays a vital role in viral replication by proton flux into the virus. The His37 tetrad is a pH sensor in the center of the M2 TM helix that activates the channel in response to the low endosomal pH. M2 consists of different regions that are believed to be involved in membrane targeting, packaging, nucleocapsid binding, and proton transport. Although M2 has been the target of many experimental and theoretical studies that have led to significant insights into its structure and function under differing conditions, the main mechanism of proton transport, its conformational dynamics, and the role of the amphipathic helices (AHs) on proton conductance remain elusive. To this end, we have applied explicit solvent constant pH molecular dynamics using the multisite λ-dynamics approach (CpHMD

Indexed as

Amino Acid MotifsBiological TransportHydrogen-Ion ConcentrationInfluenza A virusKineticsProtein Structure, SecondaryProtonsViral Matrix ProteinsViroporin ProteinsM2 protein, Influenza A virusProtonsViral Matrix ProteinsViroporin Proteinsamphipathic helixexplicit solvent CpHMDM2 transmembrane protein

Identifiers

PMID32015120
PMCPMC7035486
OpenAlexW3004917484

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.