Evidence map›Paper›PMID 32014065›Full record

ArticleBiological research2020

The comprehensive detection of miRNA, lncRNA, and circRNA in regulation of mouse melanocyte and skin development.

Zhiwei Zhu, Yueyue Ma, Yuan Li, Pengfei Li, Zhixue Cheng, Huifeng Li, Lihuan Zhang, Zhongwei Tang

Open access · goldAbstract read
In one paragraph

Article in Biological research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 35 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Zhiwei ZhuCollege of Life Science, Shanxi Agricultural University, Taigu, 030801, China. dental411@163.com.
Yueyue MaCollege of Life Science, Shanxi Agricultural University, Taigu, 030801, China.
Yuan LiDepartment of Veterinary Pharmacology and Toxicology, College of Veterinary Medicine, China Agriculture University, Beijing, 100094, China.
Pengfei LiCollege of Life Science, Shanxi Agricultural University, Taigu, 030801, China.
Zhixue ChengCollege of Animal Science and Technology, Shanxi Agricultural University, Taigu, 030801, China.
Huifeng LiCollege of Life Science, Shanxi Agricultural University, Taigu, 030801, China.
Lihuan ZhangCollege of Life Science, Shanxi Agricultural University, Taigu, 030801, China.
Zhongwei TangCollege of Life Science, Shanxi Agricultural University, Taigu, 030801, China.
Shanxi Agricultural University · CNChina Agricultural University · CN

Funding

National Natural Science Foundation of China 31402156National Natural Science Foundation of China 31873002the Key Research and Development Project of Shanxi Province 201803D31062the Program for the Top Young Innovative Talents of Shanxi Agricultural University TYIT201403
6 · The paper itself

Abstract

backgroundPigmentation development, is a complex process regulated by many transcription factors during development. With the development of the RNA sequencing (RNA-seq), non-coding RNAs, such as miRNAs, lncRNAs, and circRNAs, are found to play an important role in the function detection of related regulation factors. In this study, we provided the expression profiles and development of ncRNAs related to melanocyte and skin development in mice with black coat color skin and mice with white coat color skin during embryonic day 15 (E15) and postnatal day 7 (P7). The expression profiles of different ncRNAs were detected via RNA-seq and also confirmed by the quantitative real-time PCR (qRT-PCR) method. GO and KEGG used to analyze the function the related target genes.

resultsWe identified an extensive catalogue of 206 and 183 differently expressed miRNAs, 600 and 800 differently expressed lncRNAs, and 50 and 54 differently expressed circRNAs, respectively. GO terms and pathway analysis showed the target genes of differentially expressed miRNA and lncRNA. The host genes of circRNA were mainly enriched in cellular process, single organism process. The target genes of miRNAs were mainly enriched in chromatin binding and calcium ion binding in the nucleus. The function of genes related to lncRNAs are post translation modification. The competing endogenous RNA (ceRNA) network of lncRNAs and circRNAs displays a complex interaction between ncRNA and mRNA related to skin development, such as Tcf4, Gnas, and Gpnms related to melanocyte development.

conclusionsThe ceRNA network of lncRNA and circRNA displays a complex interaction between ncRNA and mRNA related to skin development and melanocyte development. The embryonic and postnatal development of skin provide a reference for further studies on the development mechanisms of ncRNA during pigmentation.

Indexed as

Gene Expression ProfilingMelanocytesAnimalsCell DifferentiationMiceMicroRNAsReal-Time Polymerase Chain ReactionRNA, Long NoncodingSkinSkin PigmentationMicroRNAsRNA, Long NoncodingcircRNADevelopmentlncRNAMelanocytemiRNASkin

Identifiers

PMID32014065
PMCPMC6998077
OpenAlexW3008775278

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.