Evidence map›Paper›PMID 32013879›Full record

ArticleBMC genomics2020

Identification of transcriptome and fluralaner responsive genes in the common cutworm Spodoptera litura Fabricius, based on RNA-seq.

Zhong-Qiang Jia, Di Liu, Ying-Chuan Peng, Zhao-Jun Han, Chun-Qing Zhao, Tao Tang

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 32 citations in OpenAlex.

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  4. International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Zhong-Qiang JiaKey Laboratory of Integrated Pest Management in Crops in Eastern China (Ministry of Agriculture of China), College of Plant Protection, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Di LiuKey Laboratory of Integrated Pest Management in Crops in Eastern China (Ministry of Agriculture of China), College of Plant Protection, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Ying-Chuan PengKey Laboratory of Integrated Pest Management in Crops in Eastern China (Ministry of Agriculture of China), College of Plant Protection, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Zhao-Jun HanKey Laboratory of Integrated Pest Management in Crops in Eastern China (Ministry of Agriculture of China), College of Plant Protection, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Chun-Qing ZhaoKey Laboratory of Integrated Pest Management in Crops in Eastern China (Ministry of Agriculture of China), College of Plant Protection, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China. zcq@njau.edu.cn.
Tao TangInstitute of Plant Protection, Hunan Academy of Agricultural Sciences, Changsha, 410125, People's Republic of China. tanson_1@163.com.
Nanjing Agricultural University · CNInstitute of Plant Protection · CNJiangxi Agricultural University · CN

Funding

Chinese Universities Scientific Fund KYZ201710National Key R&D Program of China 2016YFD0300700/2016YFD0300706National Natural Science Foundation of China 31830075Postgraduate Research &Practice Innovation Program of Jiangsu Province KYCX19_0530
6 · The paper itself

Abstract

backgroundFluralaner is a novel isoxazoline insecticide with a unique action site on the γ-aminobutyric acid receptor (GABAR), shows excellent activity on agricultural pests including the common cutworm Spodoptera litura, and significantly influences the development and fecundity of S. litura at either lethal or sublethal doses. Herein, Illumina HiSeq Xten (IHX) platform was used to explore the transcriptome of S. litura and to identify genes responding to fluralaner exposure.

resultsA total of 16,572 genes, including 451 newly identified genes, were observed in the S. litura transcriptome and annotated according to the COG, GO, KEGG and NR databases. These genes included 156 detoxification enzyme genes [107 cytochrome P450 enzymes (P450s), 30 glutathione S-transferases (GSTs) and 19 carboxylesterases (CarEs)] and 24 insecticide-targeted genes [5 ionotropic GABARs, 1 glutamate-gated chloride channel (GluCl), 2 voltage-gated sodium channels (VGSCs), 13 nicotinic acetylcholine receptors (nAChRs), 2 acetylcholinesterases (AChEs) and 1 ryanodine receptor (RyR)]. There were 3275 and 2491 differentially expressed genes (DEGs) in S. litura treated with LC

conclusionsThe transcriptome in this study provides more effective resources for the further study of S. litura whilst the DEGs identified sheds further light on the molecular response to fluralaner.

Indexed as

AnimalsCytochrome P-450 Enzyme SystemExome SequencingGene Expression ProfilingInactivation, MetabolicInsecticidesInsect ProteinsIsoxazolesLarvaPupaRNA-SeqSpodopteraTranscriptomeUp-RegulationA1443 compoundCytochrome P-450 Enzyme SystemInsecticidesInsect ProteinsIsoxazolesAgricultural pestsCytochrome P450 enzymeFluralanerGABA receptorResistanceSpodoptera lituraTranscriptome

Identifiers

PMID32013879
PMCPMC6998375
OpenAlexW3011615882

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.