Evidence map›Paper›PMID 32009300›Full record

ArticleTransboundary and emerging diseases2020

Genetic characterization of canine parvovirus type 2c from domestic dogs in Korea.

Bo-Youn Moon, Jiung Jang, Seong-Hee Kim, Yeon-Hee Kim, Hyun-Kyoung Lee, ByungJae So, Choi-Kyu Park, Kyoung-Ki Lee

Open access · bronzeAbstract read
In one paragraph

Article in Transboundary and emerging diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

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  17. Molecular characterization ofFrontiers in veterinary science · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Bo-Youn MoonAnimal Disease Diagnosis Division, Animal and Plant Quarantine Agency, Gimcheon, Republic of Korea.ORCID https://orcid.org/0000-0002-8474-5506
Jiung JangAnimal Disease Diagnosis Division, Animal and Plant Quarantine Agency, Gimcheon, Republic of Korea.
Seong-Hee KimAnimal Disease Diagnosis Division, Animal and Plant Quarantine Agency, Gimcheon, Republic of Korea.
Yeon-Hee KimAnimal Disease Diagnosis Division, Animal and Plant Quarantine Agency, Gimcheon, Republic of Korea.
Hyun-Kyoung Lee
ByungJae SoAnimal Disease Diagnosis Division, Animal and Plant Quarantine Agency, Gimcheon, Republic of Korea.
Choi-Kyu ParkCollege of Veterinary Medicine & Animal Disease Intervention Center, Kyungpook National University, Daegu, Republic of Korea.ORCID https://orcid.org/0000-0002-0784-9061
Kyoung-Ki LeeAnimal Disease Diagnosis Division, Animal and Plant Quarantine Agency, Gimcheon, Republic of Korea.
Animal and Plant Quarantine Agency · KRKyungpook National University · KR

Funding

Animal and Plant Quarantine Agency B-1543069-2019-21-04
6 · The paper itself

Abstract

Canine parvovirus type 2 (CPV-2) is an aetiological agent that causes acute haemorrhagic enteritis and fatal myocarditis in dogs. Since CPV-2 first emerged in the late 1970s, its rapid evolution has resulted in three antigenic variants: CPV-2a, CPV-2b and CPV-2c. Here, we report, for the first time in Korea, two cases of CPV-2c infection in two dogs with severe diarrhoea. The complete open reading frame (4,269nt) of CPV-2, encoding both non-structural (NS) and structural (VP) proteins, was sequenced. Based on the amino acid Gln present at residue 426 of the VP2 gene, these strains were typed as CPV-2c, and were named Korea CPV-2c_1 and Korea CPV-2c_2. These strains shared 99.48% reciprocal nucleotide sequence identity and had the highest nucleotide identity (99.77%-99.34%) with Asian CPV strains isolated in China, Italy (found in a dog imported from Thailand), and Vietnam from 2013 to 2017. Phylogenetic analysis based on the non-structural (NS1) and capsid (VP2) genes revealed that Korean CPV-2c strains clustered closely to Asian CPV strains, and separately from strains isolated in Europe, South America and North America. Amino acid changes never reported before were observed in NS1 (Thr70Pro, Cys287Tyr), VP1 (Lys17Arg, Phe33Leu) and VP2 (Gln365His, Ala516Val). Additional observed mutations, including Phe267Tyr, Tyr324Ile and Gln370Arg, have been previously reported in the recent CPV-2c strains with Asian origins. These results suggest that the Korean CPV-2c strains were potentially introduced via neighbouring Asian countries.

Indexed as

AnimalsBase SequenceCapsid ProteinsDNA, ViralDog DiseasesDogsOpen Reading FramesParvoviridae InfectionsParvovirus, CaninePhylogenyPolymerase Chain ReactionRepublic of KoreaViral Nonstructural ProteinsViral Structural ProteinsCapsid ProteinsDNA, ViralViral Nonstructural ProteinsViral Structural Proteinscanine parvovirus 2cepidemiologygenetic characteristicsSouth Korea

Identifiers

PMID32009300
PMCPMC7228216
OpenAlexW3003787870

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.