Evidence map›Paper›PMID 32006463›Full record

ArticleMolecular cell2020

Extraction of mRNA from Stalled Ribosomes by the Ski Complex.

Alexandra Zinoviev, Rustam K Ayupov, Irina S Abaeva, Christopher U T Hellen, Tatyana V Pestova

Abstract read
In one paragraph

Article in Molecular cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alexandra ZinovievDepartment of Cell Biology, SUNY Downstate Health Sciences University, Brooklyn, NY, USA.
Rustam K AyupovDepartment of Cell Biology, SUNY Downstate Health Sciences University, Brooklyn, NY, USA.
Irina S AbaevaDepartment of Cell Biology, SUNY Downstate Health Sciences University, Brooklyn, NY, USA.
Christopher U T HellenDepartment of Cell Biology, SUNY Downstate Health Sciences University, Brooklyn, NY, USA.
Tatyana V PestovaDepartment of Cell Biology, SUNY Downstate Health Sciences University, Brooklyn, NY, USA. Electronic address: tatyana.pestova@downstate.edu.

Funding

Mechanisms of eukaryotic translation and ribosome-associated mRNA surveillance and protein quality controlR35GM122602 · NIGMS · SUNY DOWNSTATE MEDICAL CENTER · PI TATYANA V PESTOVA · 2017 to 2026
$4.8M
Non-canonical mechanisms of translation of viral mRNAsR01AI123406 · NIAID · SUNY DOWNSTATE MEDICAL CENTER · PI HELLEN, CHRISTOPHER ULRICH TRISTRAM · 2016 to 2020
$3.1M
NIAID NIH HHS R01 AI123406NIGMS NIH HHS R35 GM122602
6 · The paper itself

Abstract

The evolutionarily conserved Ski2-Ski3-Ski8 (Ski) complex containing the 3'→5' RNA helicase Ski2 binds to 80S ribosomes near the mRNA entrance and facilitates 3'→5' exosomal degradation of mRNA during ribosome-associated mRNA surveillance pathways. Here, we assayed Ski's activity using an in vitro reconstituted translation system and report that this complex efficiently extracts mRNA from 80S ribosomes in the 3'→5' direction in a nucleotide-by-nucleotide manner. The process is ATP dependent and can occur on pre- and post-translocation ribosomal complexes. The Ski complex can engage productively with mRNA and extract it from 80S complexes containing as few as 19 (but not 13) 3'-terminal mRNA nucleotides starting from the P site. The mRNA-extracting activity of the Ski complex suggests that its role in mRNA quality control pathways is not limited to acceleration of exosomal degradation and could include clearance of stalled ribosomes from mRNA, poising mRNA for degradation and rendering stalled ribosomes recyclable by Pelota/Hbs1/ABCE1.

Indexed as

ATP-Binding Cassette TransportersDNA-Binding ProteinsEndonucleasesExosomesGTP-Binding ProteinsHumansNuclear ProteinsProto-Oncogene ProteinsRibosomesRNA, MessengerRNA StabilityABCE1 protein, humanATP-Binding Cassette TransportersDNA-Binding ProteinsEndonucleasesGTP-Binding ProteinsHBS1L protein, humanNuclear Proteinspelo protein, humanProto-Oncogene ProteinsRNA, MessengerSKI protein, humanmRNA surveillanceNo-Go decayribosome-associated quality controlRNA exosomeSki2 helicaseSki complex

Identifiers

PMID32006463
PMCPMC7934606

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.