Evidence map›Paper›PMID 32005944›Full record

ArticleCommunications biology2020

The genome of opportunistic fungal pathogen Fusarium oxysporum carries a unique set of lineage-specific chromosomes.

Yong Zhang, He Yang, David Turra, Shiguo Zhou, Dilay Hazal Ayhan, Gregory A DeIulio, Li Guo, Karen Broz, Nathan Wiederhold, Jeffrey J Coleman and 13 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 105 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. B chromosomes put the 'super' in supernumerary.Trends in genetics : TIG · 2026
    Review
  5. Article
  6. Review
  7. Review
  8. A 3DmSphere · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Virulence ofbioRxiv : the preprint server for biology · 2025
    Article
  14. Article
  15. Article
  16. Fusarium Genome Sequencing and Assembly.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  17. Article
  18. Article
  19. FoPGDB: a pangenome database of Fusarium oxysporum, a cross-kingdom fungal pathogen.Database : the journal of biological databases and curation · 2024
    Article
  20. Pangenomics of flax fungal parasiteFrontiers in plant science · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 11 institutions in 4 countries.

Yong Zhang *Department of Biochemistry and Molecular Biology, University of Massachusetts Amherst, Amherst, Massachusetts, 01003, USA.ORCID http://orcid.org/0000-0002-2276-7187
He Yang *Department of Biochemistry and Molecular Biology, University of Massachusetts Amherst, Amherst, Massachusetts, 01003, USA.
David TurraDepartamento de Genetica, Universidad de Cordoba, 14071, Cordoba, Spain.ORCID http://orcid.org/0000-0002-0687-6754
Shiguo ZhouLaboratory for Molecular and Computational Genomics, Laboratory of Genetics and Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin, 53706, USA.
Dilay Hazal AyhanDepartment of Biochemistry and Molecular Biology, University of Massachusetts Amherst, Amherst, Massachusetts, 01003, USA.
Gregory A DeIulioDepartment of Biochemistry and Molecular Biology, University of Massachusetts Amherst, Amherst, Massachusetts, 01003, USA.
Li GuoDepartment of Biochemistry and Molecular Biology, University of Massachusetts Amherst, Amherst, Massachusetts, 01003, USA.ORCID http://orcid.org/0000-0001-6100-3481
Karen BrozUSDA ARS Cereal Disease Laboratory, University of Minnesota, St. Paul, Minnesota, 55108, USA.ORCID http://orcid.org/0000-0001-7928-7216
Nathan WiederholdDepartment of Pathology, University of Texas Health Science Center at San Antonio, San Antonio, Texas, 78229, USA.ORCID http://orcid.org/0000-0002-2225-5122
Jeffrey J ColemanDepartment of Entomology and Plant Pathology, Auburn University, Auburn, Alabama, 36849, USA.ORCID http://orcid.org/0000-0001-8579-1996
Kerry O' DonnellNational Center for Agricultural Utilization Research, US Department of Agriculture, Agricultural Research Service, Peoria, Illinois, 61604, USA.
Ilan YoungsterDivision of Infectious Diseases, Boston Children's Hospital, Boston, Massachusetts, 02115, USA.
Alexander J McAdamDepartment of Laboratory Medicine, Boston Children's Hospital, Boston, Massachusetts, 02115, USA.
Sergey SavinovDepartment of Biochemistry and Molecular Biology, University of Massachusetts Amherst, Amherst, Massachusetts, 01003, USA.
Terrance SheaBroad Institute of Harvard and MIT, Cambridge, Massachusetts, 02114, USA.
Sarah YoungBroad Institute of Harvard and MIT, Cambridge, Massachusetts, 02114, USA.
Qiandong ZengBroad Institute of Harvard and MIT, Cambridge, Massachusetts, 02114, USA.
Martijn RepSwammerdam Institute for Life Science, University of Amsterdam, Amsterdam, The Netherlands.
Eric PearlmanInstitute for Immunology, Physiology and Biophysics, University of California-Irvine, Irvine, California, 92697, USA.
David C SchwartzLaboratory for Molecular and Computational Genomics, Laboratory of Genetics and Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin, 53706, USA.
Antonio Di PietroDepartamento de Genetica, Universidad de Cordoba, 14071, Cordoba, Spain.ORCID http://orcid.org/0000-0001-5930-5763
H Corby KistlerUSDA ARS Cereal Disease Laboratory, University of Minnesota, St. Paul, Minnesota, 55108, USA.ORCID http://orcid.org/0000-0001-5312-6297
Li-Jun MaDepartment of Biochemistry and Molecular Biology, University of Massachusetts Amherst, Amherst, Massachusetts, 01003, USA. lijun@biochem.umass.edu.ORCID http://orcid.org/0000-0002-2733-3708
University of Massachusetts Amherst · USBroad Institute · USBoston Children's Hospital · USUniversity of Córdoba · ESUniversity of Minnesota · USUniversity of Wisconsin–Madison · USAgricultural Research Service · USAuburn University · USNetherlands Institute for Neuroscience · NLThe University of Texas Health Science Center at San Antonio · USUniversity of California, Irvine · US

Funding

Identify virulence factors that facilitate Fusarium keratitisR01EY030150 · NEI · UNIVERSITY OF MASSACHUSETTS AMHERST · PI MA, LI-JUN · 2019 to 2023
$1.9M
NEI NIH HHS R01 EY030150
6 · The paper itself

Abstract

Fusarium oxysporum is a cross-kingdom fungal pathogen that infects plants and humans. Horizontally transferred lineage-specific (LS) chromosomes were reported to determine host-specific pathogenicity among phytopathogenic F. oxysporum. However, the existence and functional importance of LS chromosomes among human pathogenic isolates are unknown. Here we report four unique LS chromosomes in a human pathogenic strain NRRL 32931, isolated from a leukemia patient. These LS chromosomes were devoid of housekeeping genes, but were significantly enriched in genes encoding metal ion transporters and cation transporters. Homologs of NRRL 32931 LS genes, including a homolog of ceruloplasmin and the genes that contribute to the expansion of the alkaline pH-responsive transcription factor PacC/Rim1p, were also present in the genome of NRRL 47514, a strain associated with Fusarium keratitis outbreak. This study provides the first evidence, to our knowledge, for genomic compartmentalization in two human pathogenic fungal genomes and suggests an important role of LS chromosomes in niche adaptation.

Indexed as

Chromosomes, FungalGenome, FungalAmino Acid SequenceFungal ProteinsFusariosisFusariumGene Expression Regulation, FungalHumansModels, MolecularOpportunistic InfectionsPhylogenyProtein ConformationStructure-Activity RelationshipFungal Proteins

Identifiers

PMID32005944
PMCPMC6994591
OpenAlexW3003424148

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.