Evidence map›Paper›PMID 32005827›Full record

ArticleNPJ biofilms and microbiomes2020

Synthesis of ppGpp impacts type IX secretion and biofilm matrix formation in Porphyromonas gingivalis.

Hey-Min Kim, Mary E Davey

Open access · goldAbstract read
In one paragraph

Article in NPJ biofilms and microbiomes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
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  4. Review
  5. Article
  6. Effect of three oral pathogens on the TMA-TMAO metabolic pathway.Frontiers in cellular and infection microbiology · 2024
    Article
  7. An outer membrane vesicle specific lipoprotein promotesCurrent research in microbial sciences · 2024
    Article
  8. Article
  9. Article
  10. Review
  11. Growth ofJournal of oral microbiology · 2023
    Article
  12. Outer Membrane Vesicles: Biogenesis, Functions, and Issues.Microbiology and molecular biology reviews : MMBR · 2022
    Review
  13. Cortisol Promotes Surface Translocation ofPathogens (Basel, Switzerland) · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Hey-Min KimDepartment of Oral Biology, College of Dentistry, University of Florida, Gainesville, FL, USA.
Mary E DaveyDepartment of Oral Biology, College of Dentistry, University of Florida, Gainesville, FL, USA. mdavey@dental.ufl.edu.ORCID http://orcid.org/0000-0003-3814-343X
University of Florida · US

Funding

Regulatory Mechanisms Controlling Expression of P. gingivalis Surface StructuresR01DE019117 · NIDCR · UNIVERSITY OF FLORIDA · PI DAVEY, MARY ELLEN · 2009 to 2019
$4.5M
L-Arg Availability Affects the Physiological State of Porphyromonas gingivalisR01DE024580 · NIDCR · UNIVERSITY OF FLORIDA · PI DAVEY, MARY ELLEN · 2015 to 2024
$3.5M
NIDCR NIH HHS R01 DE019117NIDCR NIH HHS R01 DE024580
6 · The paper itself

Abstract

In order to persist, bacteria need to adjust their physiological state in response to external and internal cues. External stimuli are often referred to as stressors. The stringent response, mediated by the alarmone (p)ppGpp, is central to the stress response in many bacteria; yet, there is limited knowledge regarding the role of (p)ppGpp signaling in bacteria belonging to the phylum Bacteroidetes. Like its counterparts in the gut (e.g., Bacteroides thetaiotaomicron and Bacteroides fragilis), Porphyromonas gingivalis persists in close association with its human host. Given the potential for numerous perturbations in the oral cavity, and the fact that P. gingivalis can enter and replicate within host cells, we hypothesized that (p)ppGpp is a key signaling molecule for stress adaptation and persistence. Here, we show that accumulation of ppGpp in P. gingivalis is governed by two homologous enzymes, designated Rel, and RshB, and that ppGpp signaling affects growth rate, survival, biofilm formation, production of outer membrane vesicles, and expression of genes encoding type IX secretion structural and cargo proteins. Overall, our findings provide a potential mechanism by which biofilm formation and virulence of P. gingivalis are integrated via ppGpp signaling, a regulatory mechanism central to bacterial survival in dynamic environments.

Indexed as

AnimalsBacterial ProteinsBacteroidaceae InfectionsBiofilmsDisease Models, AnimalGene Expression Regulation, BacterialGuanosine PentaphosphateLepidopteraPorphyromonas gingivalisSignal TransductionStress, PhysiologicalSurvival AnalysisVirulenceBacterial ProteinsGuanosine Pentaphosphate

Identifiers

PMID32005827
PMCPMC6994654
OpenAlexW3003418133

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.