Evidence map›Paper›PMID 32005708›Full record

ArticleDiabetes2020

Rare Genetic Variants of Large Effect Influence Risk of Type 1 Diabetes.

Vincenzo Forgetta, Despoina Manousaki, Roman Istomine, Stephanie Ross, Marie-Catherine Tessier, Luc Marchand, Min Li, Hui-Qi Qu, Jonathan P Bradfield, Struan F A Grant and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Diabetes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 95 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
95citing papers in PubMed, 2 pooled it
12.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

95 citing papers in PubMed, 2 syntheses or guidelines pooled it, 150 citations in OpenAlex.

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35 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 4 countries.

Vincenzo ForgettaCentre for Clinical Epidemiology, Lady Davis Institute for Medical Research, Jewish General Hospital, McGill University, Montreal, Quebec, Canada.
Despoina ManousakiCentre for Clinical Epidemiology, Lady Davis Institute for Medical Research, Jewish General Hospital, McGill University, Montreal, Quebec, Canada.
Roman IstomineDepartment of Microbiology and Immunology, McGill University, Montreal, Quebec, Canada.
Stephanie RossDepartment of Health Research Methods, Evidence, and Impact, McMaster University, Hamilton, Ontario, Canada.
Marie-Catherine TessierCentre for Clinical Epidemiology, Lady Davis Institute for Medical Research, Jewish General Hospital, McGill University, Montreal, Quebec, Canada.
Luc MarchandDepartment of Pediatrics, McGill University, Montreal, Quebec, Canada.
Min LiThe Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi, China.
Hui-Qi QuCenter for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA.ORCID 0000-0001-9317-4488
Jonathan P BradfieldCenter for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA.
Struan F A GrantCenter for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA.
Hakon HakonarsonCenter for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA.
DCCT/EDIC Research Group
Andrew D PatersonGenetics and Genome Biology, The Hospital for Sick Children Research Institute, The Hospital for Sick Children, Dalla Lana School of Public Health, Toronto, Ontario, Canada.
Ciriaco PiccirilloDepartment of Microbiology and Immunology, McGill University, Montreal, Quebec, Canada.
Constantin PolychronakosDepartment of Human Genetics, McGill University, Montreal, Quebec, Canada.ORCID 0000-0002-7624-6635
J Brent RichardsCentre for Clinical Epidemiology, Lady Davis Institute for Medical Research, Jewish General Hospital, McGill University, Montreal, Quebec, Canada brent.richards@mcgill.ca.ORCID 0000-0002-3746-9086
Children's Hospital of Philadelphia · USMcGill University Health Centre · CAJewish General Hospital · CAHospital for Sick Children · CAImpact · CAKing's College London · GBMcGill University · CA

Funding

Limited Competition for the Continuation of Epidemiology of Diabetes Interventions and Complications (EDIC) Study Clinical Research Center (Collaborative U01)U01DK094157 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI Ionut Bebu, Barbara Halina Braffett · 2011 to 2026
$97.6M
Vector and Transgenic Mouse CoreP30DK017047 · NIDDK · UNIVERSITY OF WASHINGTON · PI Sakeneh Zraika · 1986 to 2026
$41.4M
Epidemiology of Diabetes Interventions and Complications Data Coordinating CenterU01DK094176 · NIDDK · GEORGE WASHINGTON UNIVERSITY · PI BEBU, IONUT, BRAFFETT, BARBARA HALINA · 2012 to 2022
$30.8M
Genome Wide Association Study of Latent Autoimmune Diabetes in AdultsR01DK085212 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI GRANT, STRUAN F A · 2011 to 2016
$3.4M
NIDDK NIH HHS P30 DK017047NIDDK NIH HHS R01 DK085212NIDDK NIH HHS U01 DK094157NIDDK NIH HHS U01 DK094176
6 · The paper itself

Abstract

Most replicated genetic determinants for type 1 diabetes are common (minor allele frequency [MAF] >5%). We aimed to identify novel rare or low-frequency (MAF <5%) single nucleotide polymorphisms with large effects on risk of type 1 diabetes. We undertook deep imputation of genotyped data followed by genome-wide association testing and meta-analysis of 9,358 type 1 diabetes case and 15,705 control subjects from 12 European cohorts. Candidate variants were replicated in a separate cohort of 4,329 case and 9,543 control subjects. Our meta-analysis identified 27 independent variants outside the MHC, among which 3 were novel and had MAF <5%. Three of these variants replicated with

Indexed as

AllelesGenetic Predisposition to DiseasePolymorphism, Single NucleotideDiabetes Mellitus, Type 1Gene FrequencyGenome-Wide Association StudyGenotypeHumans

Identifiers

PMID32005708
PMCPMC7085253
OpenAlexW3003402082

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.