Evidence map›Paper›PMID 32004338›Full record

ArticlePloS one2020

Genetic polymorphism in C3 is associated with progression in chronic kidney disease (CKD) patients with IgA nephropathy but not in other causes of CKD.

Sara T Ibrahim, Rajkumar Chinnadurai, Ibrahim Ali, Debbie Payne, Gillian I Rice, William G Newman, Eman Algohary, Ahmed G Adam, Philip A Kalra

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Complement activation in IgA nephropathy.Seminars in immunopathology · 2021
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Sara T IbrahimDepartment of Internal Medicine and Nephrology, Faculty of Medicine, Alexandria University, Alexandria, Egypt.ORCID 0000-0001-7442-7902
Rajkumar ChinnaduraiDepartment of Renal Medicine, Salford Royal NHS Foundation Trust, Salford, United Kingdom.ORCID 0000-0003-3973-6595
Ibrahim AliDepartment of Renal Medicine, Salford Royal NHS Foundation Trust, Salford, United Kingdom.
Debbie PayneUniversity of Manchester, Manchester, United Kingdom.
Gillian I RiceManchester Centre for Genomic Medicine, Manchester University NHS Foundation Trust, Health Innovation Manchester, Manchester, United Kingdom.
William G NewmanDivision of Evolution and Genomic Sciences, Faculty of Biology, Medicine and Human Sciences, University of Manchester, Manchester, United Kingdom.
Eman AlgoharyDepartment of Internal Medicine and Nephrology, Faculty of Medicine, Alexandria University, Alexandria, Egypt.
Ahmed G AdamDepartment of Internal Medicine and Nephrology, Faculty of Medicine, Alexandria University, Alexandria, Egypt.
Philip A KalraDepartment of Renal Medicine, Salford Royal NHS Foundation Trust, Salford, United Kingdom.
Salford Royal NHS Foundation Trust · GBAlexandria University · EGUniversity of Manchester · GBManchester University NHS Foundation Trust · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesThe R102G variant in complement 3 (C3) results in two allotypic variants: C3 fast (C3F) and C3 slow (C3S). C3F presents at increased frequency in patients with chronic kidney disease (CKD), our aim is to explore its role in CKD progression and mortality.

methodsDelta (Δ) eGFR for 2038 patients in the Salford Kidney Study (SKS) was calculated by linear regression; those with ≤-3ml/min/1.73m2/yr were defined as rapid progressors (RP) and those with ΔeGFR between -0.5 and +1ml/min/1.73m2/yr, labelled stable CKD patients (SP).A group of 454 volunteers was used as a control group. In addition, all biopsy-proven glomerulonephritis (GN) patients were studied regardless of their ΔeGFR. R102G was analysed by real-time PCR, and genotypic and allelic frequencies were compared between RP and SP along with the healthy control group.

resultsThere were 255 SP and 259 RP in the final cohort. Median ΔeGFR was 0.07 vs. -4.7 ml/min/1.73m2/yr in SP vs. RP. C3F allele frequency was found to be significantly higher in our CKD cohort (25.7%) compared with the healthy control group (20.6%); p = 0.008.However, there was no significant difference in C3F allele frequency between the RP and SP groups. In a subgroup analysis of 37 patients with IgA nephropathy in the CKD cohort (21 RP and 16 SP), there was a significantly higher frequency of C3F in RP 40.5% vs. 9.4% in SP; p = 0.003. In the GN group, Cox regression showed an association between C3F and progression only in those with IgA nephropathy (n = 114);HR = 1.9 (95% CI 1.1-3.1; p = 0.018) for individuals heterozygous for the C3F variant, increased further for individuals homozygous for the variant, HR = 2.8 (95% CI 1.2-6.2; p = 0.014).

conclusionThe C3 variant R102G is associated with progression of CKD in patients with IgA nephropathy.

Indexed as

Disease ProgressionAgedComplement C3FemaleGene FrequencyHeterozygoteHumansMaleMiddle AgedPolymorphism, GeneticRenal Insufficiency, ChronicComplement C3

Identifiers

PMID32004338
PMCPMC6994105
OpenAlexW3003950950

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.