Evidence map›Paper›PMID 32002601›Full record

ReviewApplied microbiology and biotechnology2020

Peculiarities of biofilm formation by Paracoccus denitrificans.

Kana Morinaga, Keitaro Yoshida, Kohei Takahashi, Nobuhiko Nomura, Masanori Toyofuku

Open access · bronzeAbstract readReview
In one paragraph

Review in Applied microbiology and biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Unraveling metabolic reprogramming inFrontiers in molecular biosciences · 2025
    Article
  3. Article
  4. Cryptic Oral Microbiota: What Is Its Role as Obstructive Sleep Apnea-Related Periodontal Pathogens?International journal of environmental research and public health · 2023
    Article
  5. Overexpression ofFrontiers in microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Kana MorinagaBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology, Central 6, 1-1-1 Higashi, Tsukuba, Ibaraki, 305-8566, Japan.ORCID https://orcid.org/0000-0001-6739-7514
Keitaro YoshidaBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology, 2-17-2-1, Tsukisamu-higashi, Toyohira-ku, Sapporo, Japan.
Kohei TakahashiGraduate School of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8572, Japan.
Nobuhiko NomuraFaculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8572, Japan.
Masanori ToyofukuFaculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8572, Japan. toyofuku.masanori.gf@u.tsukuba.ac.jp.ORCID https://orcid.org/0000-0003-4627-9230
University of Tsukuba · JPNational Institute of Advanced Industrial Science and Technology · JP

Funding

Exploratory Research for Advanced Technology JPMJER1502Ministry of Education, Culture, Sports, Science and Technology 16H06382Ministry of Education, Culture, Sports, Science and Technology 19H02866Ministry of Education, Culture, Sports, Science and Technology 19H05682
6 · The paper itself

Abstract

Most bacteria form biofilms, which are thick multicellular communities covered in extracellular matrix. Biofilms can become thick enough to be even observed by the naked eye, and biofilm formation is a tightly regulated process. Paracoccus denitrificans is a non-motile, Gram-negative bacterium that forms a very thin, unique biofilm. A key factor in the biofilm formed by this bacterium is a large surface protein named biofilm-associated protein A (BapA), which was recently reported to be regulated by cyclic diguanosine monophosphate (cyclic-di-GMP or c-di-GMP). Cyclic-di-GMP is a major second messenger involved in biofilm formation in many bacteria. Though cyclic-di-GMP is generally reported as a positive regulatory factor in biofilm formation, it represses biofilm formation in P. denitrificans. Furthermore, quorum sensing (QS) represses biofilm formation in this bacterium, which is also reported as a positive regulator of biofilm formation in most bacteria. The QS signal used in P. denitrificans is hydrophobic and is delivered through membrane vesicles. Studies on QS show that P. denitrificans can potentially form a thick biofilm but maintains a thin biofilm under normal growth conditions. In this review, we discuss the peculiarities of biofilm formation by P. denitrificans with the aim of deepening the overall understanding of bacterial biofilm formation and functions.

Indexed as

Gene Expression Regulation, BacterialQuorum SensingBacterial ProteinsBiofilmsCyclic GMPMembrane ProteinsParacoccus denitrificansBacterial Proteinsbis(3',5')-cyclic diguanylic acidCyclic GMPMembrane ProteinsBapABiofilmCyclic-di GMPMembrane vesicleParacoccus denitrificansQuorum-sensing

Identifiers

PMID32002601
PMCPMC7223048
OpenAlexW3004051722

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.