Article3 Biotech2020
Whole-genome diversity, population structure and linkage disequilibrium analysis of globally diverse wheat genotypes using genotyping-by-sequencing DArTseq platform.
Article in 3 Biotech, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
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7 citing papers in PubMed, 15 citations in OpenAlex.
- Integration and imputation of GBS-derived and DArTseq-derived SNP markers in assessing genetic diversity of bread wheat genotypes.BMC genomics · 2026Article
- Genetic diversity and population structure of a core collection of Mediterranean durum wheat accessions using DArTseq markers.BMC genomics · 2025Article
- Extent and patterns of morphological and molecular genetic diversity and population structure of Nigerian Taro cultivars.BMC plant biology · 2024Article
- Harnessing genome-wide genetic diversity, population structure and linkage disequilibrium in Ethiopian durum wheat gene pool.Frontiers in plant science · 2023Article
- SNP markers identification by genome wide association study for chemical quality traits of coffee (Coffea spp.) Germplasm.Molecular biology reports · 2022Article
- Exploration of the Genetic Diversity of Solina Wheat and Its Implication for Grain Quality.Plants (Basel, Switzerland) · 2022Article
- Assessment of genetic relationships among native and introduced Himalayan balsam (Ecology and evolution · 2021Article
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Authors and funding
4 authors at 3 institutions in 1 country.
Funding
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Abstract
In this study, 129 wheat genotypes from globally diverse origins were genotyped using DArTseq (SilicoDArT and SNP) markers. After filtering markers for quality-filtering, 14,270 SilicoDArTs and 6484 SNPs were retained and used for genetic diversity, population structure and linkage disequilibrium analyses. The highest number of SilicoDArT and SNP markers mapped on genome A and B compared to genome D. In both marker types, polymorphism information content (PIC) values ranged from 0.1 to 0.5, while > 0.80% of SilicoDArTs and > 0.44% SNPs showed PIC value more than median (0.25%). Un-weighted Neighbor Joining cluster analysis and Bayesian-based model population structure grouped wheat genotypes into three and four clusters, respectively. Principal component analysis and discriminant analysis of principal component results showed highly match with cluster and population structure analysis. Linkage disequilibrium (LD) was more extensive in both marker types, while graphical display of LD decay for both marker types showed that LD declined in the region close to 15 kbp, where
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