Evidence map›Paper›PMID 32002298›Full record

ArticleOncoimmunology2020

Identification of a CD8+ T-cell response to a predicted neoantigen in malignant mesothelioma.

Sophie Sneddon, Craig M Rive, Shaokang Ma, Ian M Dick, Richard J N Allcock, Scott D Brown, Robert A Holt, Mark Watson, Shay Leary, Y C Gary Lee and 2 more

Open access · goldAbstract read
In one paragraph

Article in Oncoimmunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

  1. Trial
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  6. Article
  7. SIGANEO: Similarity network with GAN enhancement for immunogenic neoepitope prediction.Computational and structural biotechnology journal · 2023
    Article
  8. The Detection of Immunity against WT1 and SMAD4International journal of molecular sciences · 2022
    Article
  9. Review
  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Sophie SneddonNational Centre for Asbestos Related Disease, School of Medicine and Pharmacology, University of Western Australia, Nedlands, Australia.ORCID 0000-0003-4611-0822
Craig M RiveNational Centre for Asbestos Related Disease, School of Medicine and Pharmacology, University of Western Australia, Nedlands, Australia.
Shaokang MaNational Centre for Asbestos Related Disease, School of Medicine and Pharmacology, University of Western Australia, Nedlands, Australia.
Ian M DickNational Centre for Asbestos Related Disease, School of Medicine and Pharmacology, University of Western Australia, Nedlands, Australia.ORCID 0000-0003-1902-9033
Richard J N AllcockPathwest Laboratory Medicine, Western Australia, QEII Medical Centre, Nedlands, Australia.
Scott D BrownMichael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
Robert A HoltMichael Smith Genome Sciences Centre, BC Cancer, Vancouver, British Columbia, Canada.
Mark WatsonInstitute for Immunology and Infectious Diseases, Murdoch University, Murdoch, Australia.
Shay LearyInstitute for Immunology and Infectious Diseases, Murdoch University, Murdoch, Australia.
Y C Gary LeeNational Centre for Asbestos Related Disease, School of Medicine and Pharmacology, University of Western Australia, Nedlands, Australia.
Bruce W S RobinsonNational Centre for Asbestos Related Disease, School of Medicine and Pharmacology, University of Western Australia, Nedlands, Australia.
Jenette CreaneyNational Centre for Asbestos Related Disease, School of Medicine and Pharmacology, University of Western Australia, Nedlands, Australia.ORCID 0000-0002-9391-9395
The University of Western Australia · AUCanada's Michael Smith Genome Sciences Centre · CAMurdoch University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neoantigens present unique and specific targets for personalized cancer immunotherapy strategies. Given the low mutational burden yet immunotherapy responsiveness of malignant mesothelioma (MM) when compared to other carcinogen-induced malignancies, identifying candidate neoantigens and T cells that recognize them has been a challenge. We used pleural effusions to gain access to MM tumor cells as well as immune cells in order to characterize the tumor-immune interface in MM. We characterized the landscape of potential neoantigens from SNVs identified in 27 MM patients and performed whole transcriptome sequencing of cell populations from 18 patient-matched pleural effusions. IFNγ ELISpot was performed to detect a CD8+ T cell responses to predicted neoantigens in one patient. We detected a median of 68 (range 7-258) predicted neoantigens across the samples. Wild-type non-binding to mutant binding predicted neoantigens increased risk of death in a model adjusting for age, sex, smoking status, histology and treatment (HR: 33.22, CI: 2.55-433.02,

Indexed as

Mesothelioma, MalignantAntigens, NeoplasmCD8-Positive T-LymphocytesHumansImmunotherapyReceptors, Cell SurfaceRoundabout ProteinsAntigens, NeoplasmReceptors, Cell SurfaceROBO3 protein, humanRoundabout ProteinsMalignant mesotheliomaneoantigenpleural effusiontumor-immune interface

Identifiers

PMID32002298
PMCPMC6959430
OpenAlexW2988646927

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.