Evidence map›Paper›PMID 32001525›Full record

ArticleScience (New York, N.Y.)2020

Structural basis of second-generation HIV integrase inhibitor action and viral resistance.

Nicola J Cook, Wen Li, Dénes Berta, Magd Badaoui, Allison Ballandras-Colas, Andrea Nans, Abhay Kotecha, Edina Rosta, Alan N Engelman, Peter Cherepanov

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
1.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 104 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Nicola J CookChromatin Structure and Mobile DNA Laboratory, Francis Crick Institute, London NW1 1AT, UK.ORCID 0000-0002-2738-7976
Wen LiDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.ORCID 0000-0003-0197-0933
Dénes BertaDepartment of Chemistry, King's College London, London SE1 1DB, UK.ORCID 0000-0002-8299-3784
Magd BadaouiDepartment of Chemistry, King's College London, London SE1 1DB, UK.ORCID 0000-0001-9521-6696
Allison Ballandras-ColasChromatin Structure and Mobile DNA Laboratory, Francis Crick Institute, London NW1 1AT, UK.ORCID 0000-0003-4735-4984
Andrea NansStructural Biology Science Technology Platform, Francis Crick Institute, London NW1 1AT, UK.ORCID 0000-0002-3791-2447
Abhay KotechaThe Wellcome Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.ORCID 0000-0002-4480-5439
Edina RostaDepartment of Chemistry, King's College London, London SE1 1DB, UK.ORCID 0000-0002-9823-4766
Alan N EngelmanDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA 02215, USA. peter.cherepanov@crick.ac.uk alan_engelman@dfci.harvard.edu.ORCID 0000-0002-9709-2591
Peter CherepanovChromatin Structure and Mobile DNA Laboratory, Francis Crick Institute, London NW1 1AT, UK. peter.cherepanov@crick.ac.uk alan_engelman@dfci.harvard.edu.ORCID 0000-0002-0634-538X
The Francis Crick Institute · GBKing's College London · GBHarvard University · USCentre for Human Genetics · GB

Funding

Technology Development 2: MAS NMR and dynamic nuclear polarization for HIV-1 structural biologyP50AI150481 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GRONENBORN, ANGELA M. · 2019 to 2021
$14.1M
Integrase Structural VirologyR01AI070042 · NIAID · DANA-FARBER CANCER INST · PI ENGELMAN, ALAN N. · 2006 to 2020
$7.2M
Medical Research Council FC001061NIAID NIH HHS P50 AI150481NIAID NIH HHS R01 AI070042Wellcome Trust FC001061
6 · The paper itself

Abstract

Although second-generation HIV integrase strand-transfer inhibitors (INSTIs) are prescribed throughout the world, the mechanistic basis for the superiority of these drugs is poorly understood. We used single-particle cryo-electron microscopy to visualize the mode of action of the advanced INSTIs dolutegravir and bictegravir at near-atomic resolution. Glutamine-148→histidine (Q148H) and glycine-140→serine (G140S) amino acid substitutions in integrase that result in clinical INSTI failure perturb optimal magnesium ion coordination in the enzyme active site. The expanded chemical scaffolds of second-generation compounds mediate interactions with the protein backbone that are critical for antagonizing viruses containing the Q148H and G140S mutations. Our results reveal that binding to magnesium ions underpins a fundamental weakness of the INSTI pharmacophore that is exploited by the virus to engender resistance and provide a structural framework for the development of this class of anti-HIV/AIDS therapeutics.

Indexed as

Drug Resistance, ViralAmidesAmino Acid SubstitutionCatalytic DomainCryoelectron MicroscopyDolutegravirGlutamineGlycineHeterocyclic Compounds, 3-RingHeterocyclic Compounds, 4 or More RingsHistidineHIV IntegraseHIV Integrase InhibitorsHumansMagnesiumMutationAmidesbictegravirDolutegravirGlutamineGlycineHeterocyclic Compounds, 3-RingHeterocyclic Compounds, 4 or More RingsHistidineHIV IntegraseHIV Integrase InhibitorsMagnesiumOxazinesPiperazinesPyridonesSerine

Identifiers

PMID32001525
PMCPMC7023979
OpenAlexW3004171189

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.