Evidence map›Paper›PMID 32001521›Full record

ArticleScience (New York, N.Y.)2020

Structural basis for strand-transfer inhibitor binding to HIV intasomes.

Dario Oliveira Passos, Min Li, Ilona K Jóźwik, Xue Zhi Zhao, Diogo Santos-Martins, Renbin Yang, Steven J Smith, Youngmin Jeon, Stefano Forli, Stephen H Hughes and 3 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
1.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 107 citations in OpenAlex.

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12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Dario Oliveira Passos *The Salk Institute for Biological Studies, Laboratory of Genetics, La Jolla, CA 92037, USA.ORCID 0000-0003-1333-9102
Min Li *National Institutes of Health, National Institute of Diabetes and Digestive Diseases, Bethesda, MD 20892, USA.
Ilona K JóźwikThe Salk Institute for Biological Studies, Laboratory of Genetics, La Jolla, CA 92037, USA.ORCID 0000-0002-7150-5802
Xue Zhi ZhaoCenter for Cancer Research, National Cancer Institute, Frederick, MD 21702, USA.ORCID 0000-0003-1006-6364
Diogo Santos-MartinsDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.ORCID 0000-0003-4622-3747
Renbin YangNational Institutes of Health, National Institute of Diabetes and Digestive Diseases, Bethesda, MD 20892, USA.ORCID 0000-0001-9640-4189
Steven J SmithCenter for Cancer Research, National Cancer Institute, Frederick, MD 21702, USA.
Youngmin JeonThe Salk Institute for Biological Studies, Laboratory of Genetics, La Jolla, CA 92037, USA.ORCID 0000-0001-7563-4743
Stefano ForliDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.ORCID 0000-0002-5964-7111
Stephen H HughesCenter for Cancer Research, National Cancer Institute, Frederick, MD 21702, USA.
Terrence R BurkeCenter for Cancer Research, National Cancer Institute, Frederick, MD 21702, USA.ORCID 0000-0001-9925-8586
Robert CraigieNational Institutes of Health, National Institute of Diabetes and Digestive Diseases, Bethesda, MD 20892, USA.ORCID 0000-0001-9516-6385
Dmitry LyumkisThe Salk Institute for Biological Studies, Laboratory of Genetics, La Jolla, CA 92037, USA. dlyumkis@salk.edu.ORCID 0000-0002-8124-7472
National Cancer Institute · USNational Institute of Diabetes and Digestive and Kidney Diseases · USSalk Institute for Biological Studies · USScripps Research Institute · US

Funding

Viral Vector Core (VVC)P30CA014195 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Alan Saghatelian · 1985 to 2026
$82.8M
ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI KHOSLA, CHAITAN · 1985 to 2011
$38.9M
Studies of nucleoprotein complexes involved in retroviral DNA integrationZIADK036169 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI CRAIGIE, ROBERT · 2009 to 2025
$22.5M
X-ray Crystallographic Fragment Screening CoreU54AI150472 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI OLSON, ARTHUR J. · 2019 to 2021
$15.7M
TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX · 2012 to 2021
$14.7M
IntegraseZIABC011426 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI HUGHES, STEPHEN H · 2012 to 2022
$14.0M
Design and Synthesis of HIV Integrase as Potential Anti-AIDS DrugsZIABC007363 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BURKE, TERRENCE · 2009 to 2025
$11.7M
X-ray Crystallographic Fragment Screening CoreU54GM103368 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI LYUMKIS, DMITRY · 2017 to 2018
$11.1M
AutoDock Suite: Next Generation Environment for Drug DesignR01GM069832 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI FORLI, STEFANO · 2004 to 2025
$10.9M
Pilot and Feasibility Project ProgramP30GM103331 · NIGMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI KIRKWOOD, KEITH L · 2012 to 2016
$5.2M
Structural basis for activity of and resistance to HIV integrase inhibitorsR01AI136680 · NIAID · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI LYUMKIS, DMITRY · 2017 to 2021
$3.5M
Structural basis for activity of and resistance to HIV integrase inhibitorsU01AI136680 · NIAID · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI LYUMKIS, DMITRY · 2022 to 2025
$3.4M
NCI NIH HHS P30 CA014195NCRR NIH HHS P41 RR001209NIAID NIH HHS R01 AI136680NIAID NIH HHS R01 AI146017NIAID NIH HHS U01 AI136680NIAID NIH HHS U54 AI150472NIGMS NIH HHS P30 GM103331NIGMS NIH HHS P41 GM103310NIGMS NIH HHS R01 GM069832NIGMS NIH HHS U54 GM103368
6 · The paper itself

Abstract

The HIV intasome is a large nucleoprotein assembly that mediates the integration of a DNA copy of the viral genome into host chromatin. Intasomes are targeted by the latest generation of antiretroviral drugs, integrase strand-transfer inhibitors (INSTIs). Challenges associated with lentiviral intasome biochemistry have hindered high-resolution structural studies of how INSTIs bind to their native drug target. Here, we present high-resolution cryo-electron microscopy structures of HIV intasomes bound to the latest generation of INSTIs. These structures highlight how small changes in the integrase active site can have notable implications for drug binding and design and provide mechanistic insights into why a leading INSTI retains efficacy against a broad spectrum of drug-resistant variants. The data have implications for expanding effective treatments available for HIV-infected individuals.

Indexed as

Drug Resistance, ViralAmidesCryoelectron MicroscopyDrug DesignHeterocyclic Compounds, 3-RingHeterocyclic Compounds, 4 or More RingsHIVHIV IntegraseHIV Integrase InhibitorsHumansMultiprotein ComplexesNaphthyridinesNucleoproteinsPiperazinesPyridonesVirus IntegrationAmidesbictegravirHeterocyclic Compounds, 3-RingHeterocyclic Compounds, 4 or More RingsHIV IntegraseHIV Integrase InhibitorsMultiprotein ComplexesNaphthyridinesNucleoproteinsPiperazinesPyridones

Identifiers

PMID32001521
PMCPMC7357238
OpenAlexW3004184083

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.