Evidence map›Paper›PMID 32000663›Full record

ArticleBMC genomics2020

Exploring the role of Luman/CREB3 in regulating decidualization of mice endometrial stromal cells by comparative transcriptomics.

Fan Zhao, Huan Liu, Nan Wang, Lijun Yu, Aihua Wang, Yanglei Yi, Yaping Jin

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Fan ZhaoCollege of Veterinary Medicine, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Huan LiuCollege of Veterinary Medicine, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Nan WangInstitute of Biological Resources and Diversity, College of Life Sciences, China Jiliang University, Hangzhou, 310018, Zhejiang, China.
Lijun YuCollege of Veterinary Medicine, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Aihua WangCollege of Veterinary Medicine, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Yanglei YiCollege of Food Science and Engineering, Northwest A&F University, Yangling, 712100, Shaanxi, China. yyi@nwafu.edu.cn.ORCID http://orcid.org/0000-0002-6299-6742
Yaping JinCollege of Veterinary Medicine, Northwest A&F University, Yangling, 712100, Shaanxi, China. yapingjin@163.com.
Northwest A&F University · CNNorth West Agriculture and Forestry University · CNChina Jiliang University · CN

Funding

Key Technology Research and Development Program of Ningxia Hui Region 2018BBF33001National Natural Science Foundation of China 31772817
6 · The paper itself

Abstract

backgroundLuman is a member of CREB3 (cAMP responsive element-binding) subfamily of the basic leucine-zipper (bZIP) transcription factors. It may play an important regulatory role during the decidualization process since Luman was highly expressed in the decidual cells. However, the exact molecular mechanisms of how Luman regulating decidualization is unknown.

resultsUsing an in vitro model, we prove that Luman knockdown significantly affects the decidualization process of mice endometrial stromal cells (ESCs) as the expression of two decidual markers PRL8a2 and PRL3c1 were repressed. We employed massively parallel RNA sequencing (RNA-Seq) to understand the changes in the transcriptional landscape associated with knockdown of Luman in ESCs during in vitro decidualization. We found significant dysregulation of genes related to protein processing in the endoplasmic reticulum (ER). Several genes involved in decidualization including bone morphogenetic proteins (e.g. BMP1, BMP4, BMP8A, BMP2, and BMP8B), growth factor-related genes (e.g. VEGFB, FGF10, and FGFR2), and transcription factors (IF4E, IF4A2, WNT4, WNT9A, ETS1, NOTCH1, IRX1, IDB1, IDB2, and IDB3), show altered expression. We also found that the knockdown of Luman is associated with increased expression of cell cycle-related genes including cycA1, cycB1, cycB2, CDK1, CDK2, and PLPK1, which resulted in an increased proportion of ESCs in the G1 phase. Differentially expressed genes (DEGs) were highly enriched on ECM-receptor interaction signaling, endoplasmic reticulum protein processing, focal adhesion, and PI3K-Akt signaling pathways.

conclusionsLuman knockdown results in widespread gene dysregulation during decidualization of ESCs. Genes involved in protein processing in ER, bone morphogenetic protein, growth factor, and cell cycle progression were identified as particularly important for explaining the decidual deficiency observed in this in vitro model. Therefore, this study provides clues as to the underlying mechanisms that may expand our understanding of gene regulation during decidualization.

Indexed as

Gene Regulatory NetworksAnimalsCyclic AMP Response Element-Binding ProteinDeciduaEndometriumFemaleGene Expression ProfilingGene Expression RegulationGene Knockdown TechniquesHigh-Throughput Nucleotide SequencingMiceSequence Analysis, RNACreb3 protein, mouseCyclic AMP Response Element-Binding ProteinDecidualizationEndometrial stromal cellLumanRNA-SeqTranscriptomics

Identifiers

PMID32000663
PMCPMC6993373
OpenAlexW3009000757

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.