Evidence map›Paper›PMID 31999394›Full record

ArticleHuman mutation2020

Functional characterization of the first missense variant in CEP78, a founder allele associated with cone-rod dystrophy, hearing loss, and reduced male fertility.

Giulia Ascari, Frank Peelman, Pietro Farinelli, Toon Rosseel, Nina Lambrechts, Kirsten A Wunderlich, Matias Wagner, Konstantinos Nikopoulos, Pernille Martens, Irina Balikova and 21 more

Open access · hybridAbstract readCase Reports
In one paragraph

Article in Human mutation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Loss-of-function mutations inScience advances · 2022
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Long-Read Sequencing to Unravel Complex Structural Variants ofFrontiers in cell and developmental biology · 2021
    Article
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 12 institutions in 7 countries.

Giulia AscariDepartment of Biomolecular Medicine, Center for Medical Genetics Ghent, Ghent University Hospital, Ghent University, Ghent, Belgium.ORCID 0000-0001-6175-6774
Frank PeelmanDepartment of Medical Protein Research, Faculty of Medicine and Health Sciences, Flanders Institute for Biotechnology (VIB), Ghent University, Ghent, Belgium.ORCID 0000-0001-6852-8731
Pietro FarinelliDepartment of Computational Biology, Unit of Medical Genetics, University of Lausanne, Lausanne, Switzerland.ORCID 0000-0002-4242-3090
Toon RosseelDepartment of Biomolecular Medicine, Center for Medical Genetics Ghent, Ghent University Hospital, Ghent University, Ghent, Belgium.ORCID 0000-0002-8155-3197
Nina LambrechtsDepartment of Biomolecular Medicine, Center for Medical Genetics Ghent, Ghent University Hospital, Ghent University, Ghent, Belgium.ORCID 0000-0001-9233-6211
Kirsten A WunderlichDepartment of Computational Biology, Unit of Medical Genetics, University of Lausanne, Lausanne, Switzerland.ORCID 0000-0002-4927-1851
Matias WagnerInstitute of Human Genetics, Faculty of Medicine, Technical University of Munich, Munich, Germany.ORCID 0000-0002-4454-8823
Konstantinos NikopoulosOncogenomics laboratory, Department of Hematology, Lausanne University Hospital (CHUV), Lausanne, Switzerland.ORCID 0000-0002-1856-2752
Pernille MartensDepartment of Biology, University of Copenhagen, Copenhagen, Denmark.
Irina BalikovaDepartment of Ophthalmology, Ghent University Hospital, Ghent, Belgium.ORCID 0000-0002-7487-2288
Lara DeryckeUpper Airways Research Laboratory, Department Otorhinolaryngology, Ghent University Hospital, Ghent, Belgium.ORCID 0000-0001-6638-0497
Gabriële HoltappelsUpper Airways Research Laboratory, Department Otorhinolaryngology, Ghent University Hospital, Ghent, Belgium.
Olga KryskoUpper Airways Research Laboratory, Department Otorhinolaryngology, Ghent University Hospital, Ghent, Belgium.ORCID 0000-0001-5019-0752
Thalia Van LaethemDepartment of Biomolecular Medicine, Center for Medical Genetics Ghent, Ghent University Hospital, Ghent University, Ghent, Belgium.
Sarah De JaegereDepartment of Biomolecular Medicine, Center for Medical Genetics Ghent, Ghent University Hospital, Ghent University, Ghent, Belgium.
Brecht GuillemynDepartment of Biomolecular Medicine, Center for Medical Genetics Ghent, Ghent University Hospital, Ghent University, Ghent, Belgium.ORCID 0000-0001-7194-6651
Riet De RyckeDepartment of Biomedical Molecular Biology and Expertise Centre for Transmission Electron Microscopy, Ghent University, Ghent, Belgium.ORCID 0000-0001-8270-7015
Jan De BleeckerDepartment of Neurology, Ghent University Hospital, Ghent, Belgium.
David CreytensDepartment of Pathology, Ghent University Hospital, Ghent, Belgium.ORCID 0000-0002-2877-4855
Jo Van DorpeDepartment of Pathology, Ghent University Hospital, Ghent, Belgium.ORCID 0000-0001-8175-2930
Jan GerrisDepartment of Human Structure and Repair, Ghent University Hospital, Ghent, Belgium.
Claus BachertUpper Airways Research Laboratory, Department Otorhinolaryngology, Ghent University Hospital, Ghent, Belgium.ORCID 0000-0003-4742-1665
Christiane NeuhoferInstitute of Human Genetics, University Medical Center Göttingen (UMG), Göttingen, Germany.ORCID 0000-0002-5037-4444
Sophie WalraedtDepartment of Ophthalmology, Ghent University Hospital, Ghent, Belgium.
Almut BischoffDepartment of Neurology, Friedrich-Baur-Institute, Ludwig-Maximilians-University, Munich, Germany.
Lotte B PedersenDepartment of Biology, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0002-9749-3758
Thomas KlopstockDepartment of Neurology, Friedrich-Baur-Institute, Ludwig-Maximilians-University, Munich, Germany.ORCID 0000-0003-2805-4652
Carlo RivoltaDepartment of Computational Biology, Unit of Medical Genetics, University of Lausanne, Lausanne, Switzerland.ORCID 0000-0002-0733-9950
Bart P LeroyDepartment of Biomolecular Medicine, Center for Medical Genetics Ghent, Ghent University Hospital, Ghent University, Ghent, Belgium.ORCID 0000-0002-9899-2081
Elfride De BaereDepartment of Biomolecular Medicine, Center for Medical Genetics Ghent, Ghent University Hospital, Ghent University, Ghent, Belgium.ORCID 0000-0002-5609-6895
Frauke CoppietersDepartment of Biomolecular Medicine, Center for Medical Genetics Ghent, Ghent University Hospital, Ghent University, Ghent, Belgium.ORCID 0000-0001-7224-0992
Ghent University Hospital · BEUniversity of Copenhagen · DKChildren's Hospital of Philadelphia · USFriedrich Baur Stiftung · DEGerman Center for Neurodegenerative Diseases · DEGhent University · BEHelmholtz Zentrum München · DELudwig-Maximilians-Universität München · DEUniversitätsmedizin Göttingen · DEUniversity of Lausanne · CHUniversity of Leicester · GBVlaams Instituut voor Biotechnologie · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Inactivating variants in the centrosomal CEP78 gene have been found in cone-rod dystrophy with hearing loss (CRDHL), a particular phenotype distinct from Usher syndrome. Here, we identified and functionally characterized the first CEP78 missense variant c.449T>C, p.(Leu150Ser) in three CRDHL families. The variant was found in a biallelic state in two Belgian families and in a compound heterozygous state-in trans with c.1462-1G>T-in a third German family. Haplotype reconstruction showed a founder effect. Homology modeling revealed a detrimental effect of p.(Leu150Ser) on protein stability, which was corroborated in patients' fibroblasts. Elongated primary cilia without clear ultrastructural abnormalities in sperm or nasal brushes suggest impaired cilia assembly. Two affected males from different families displayed sperm abnormalities causing infertility. One of these is a heterozygous carrier of a complex allele in SPAG17, a ciliary gene previously associated with autosomal recessive male infertility. Taken together, our data indicate that a missense founder allele in CEP78 underlies the same sensorineural CRDHL phenotype previously associated with inactivating variants. Interestingly, the CEP78 phenotype has been possibly expanded with male infertility. Finally, CEP78 loss-of-function variants may have an underestimated role in misdiagnosed Usher syndrome, with or without sperm abnormalities.

Indexed as

AllelesFounder EffectMutation, MissenseAdolescentCell Cycle ProteinsCiliaCone-Rod DystrophiesDNA Mutational AnalysisExome SequencingFemaleFibroblastsGenotypeHearing LossHumansInfertility, MaleMaleCell Cycle ProteinsCEP78 protein, humanCEP78ciliacone-rod dystrophy with hearing loss (CRDHL)foundermale infertilitymissense

Identifiers

PMID31999394
PMCPMC7187288
OpenAlexW3003408662

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.