Evidence map›Paper›PMID 31998352›Full record

ArticleFrontiers in plant science2019

Shifts in the Active Rhizobiome Paralleling Low

Paula Harkes, Joris Johannes Matheus van Steenbrugge, Sven Johannes Josephus van den Elsen, Afnan Khalil Ahmad Suleiman, Johannes Jan de Haan, Martijn Hermanus Maria Holterman, Johannes Helder

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  5. Review
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  9. Article
  10. Pea (Frontiers in microbiology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Paula HarkesLaboratory of Nematology, Department of Plant Sciences, Wageningen University & Research, Wageningen, Netherlands.
Joris Johannes Matheus van SteenbruggeLaboratory of Nematology, Department of Plant Sciences, Wageningen University & Research, Wageningen, Netherlands.
Sven Johannes Josephus van den ElsenLaboratory of Nematology, Department of Plant Sciences, Wageningen University & Research, Wageningen, Netherlands.
Afnan Khalil Ahmad SuleimanDepartment of Microbial Ecology, NIOO-KNAW, Wageningen, Netherlands.
Johannes Jan de HaanOpen Teelten, Department of Wageningen Plant Research, Wageningen University & Research, Lelystad, Netherlands.
Martijn Hermanus Maria HoltermanLaboratory of Nematology, Department of Plant Sciences, Wageningen University & Research, Wageningen, Netherlands.
Johannes HelderLaboratory of Nematology, Department of Plant Sciences, Wageningen University & Research, Wageningen, Netherlands.
Wageningen University & Research · NLNetherlands Institute of Ecology · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants manipulate their rhizosphere community in a species and even a plant life stage-dependent manner. In essence plants select, promote and (de)activate directly the local bacterial and fungal community, and indirectly representatives of the next trophic level, protists and nematodes. By doing so, plants enlarge the pool of bioavailable nutrients and maximize local disease suppressiveness within the boundaries set by the nature of the local microbial community. MiSeq sequencing of specific variable regions of the 16S or 18S ribosomal DNA (rDNA) is widely used to map microbial shifts. As current RNA extraction procedures are time-consuming and expensive, the rRNA-based characterization of the active microbial community is taken along less frequently. Recently, we developed a relatively fast and affordable protocol for the simultaneous extraction of rDNA and rRNA from soil. Here, we investigated the long-term impact of three type of soil management, two conventional and an organic regime, on soil biota in fields naturally infested with the Columbian root-knot nematode

Indexed as

active microbiomedisease suppressivenessMeloidogyne chitwoodiorganic soil managementrhizosphere

Identifiers

PMID31998352
PMCPMC6965313
OpenAlexW2999991666

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.